SELENON (selenoprotein N) - Rat Genome Database

Name: SELENON
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: SELENON (selenoprotein N) Pan paniscus

Analyze

Symbol:

SELENON

Name:

selenoprotein N

RGD ID:

11836954

Description:

INVOLVED IN calcium ion homeostasis (ortholog); cellular response to caffeine (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH congenital fiber-type disproportion (ortholog); congenital structural myopathy (ortholog); Joint Instability (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

selenoprotein N, 1; SEPN1

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SELENON (selenoprotein N)	NCBI	Ortholog
Mus musculus (house mouse):	Selenon (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Selenon (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Selenon (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SELENON (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Selenon (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SELENON (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SELENON (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Selenon (selenoprotein N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	26,126,602 - 26,144,249 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	26,127,125 - 26,141,745 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	25,058,907 - 25,076,817 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital fiber-type disproportion (ISO)

congenital structural myopathy (ISO)

Joint Instability (ISO)

muscular dystrophy (ISO)

rigid spine muscular dystrophy 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion homeostasis (ISO)

cellular response to caffeine (ISO)

cellular response to oxidative stress (ISO)

lung alveolus development (ISO)

mitochondrion organization (ISO)

multicellular organismal response to stress (ISO)

positive regulation of response to oxidative stress (ISO)

positive regulation of skeletal muscle cell proliferation (ISO)

regulation of ryanodine-sensitive calcium-release channel activity (ISO)

respiratory system process (ISO)

response to muscle activity involved in regulation of muscle adaptation (ISO)

skeletal muscle fiber development (ISO)

skeletal muscle satellite cell differentiation (ISO)

skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration (ISO)

skeletal muscle tissue regeneration (ISO)

Cellular Component

endoplasmic reticulum membrane (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

SELENON
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	26,126,602 - 26,144,249 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	26,127,125 - 26,141,745 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	25,058,907 - 25,076,817 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SELENON
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	25,800,176 - 25,818,221 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	25,800,193 - 25,818,221 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	26,126,667 - 26,144,713 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	1	26,126,684 - 26,144,712 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	25,999,254 - 26,017,300 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	1	24,522,754 - 24,540,804 (+)	NCBI
Cytogenetic Map	1	p36.11	NCBI
HuRef	1	24,383,830 - 24,400,647 (+)	NCBI		HuRef
CHM1_1	1	26,240,110 - 26,257,988 (+)	NCBI		CHM1_1

Selenon
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	134,265,203 - 134,279,477 (-)	NCBI	GRCm39		mm39
GRCm38	4	134,537,892 - 134,552,166 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	134,537,892 - 134,552,166 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	134,093,807 - 134,108,081 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	133,809,971 - 133,814,432 (-)	NCBI			mm8
Celera	4	132,720,626 - 132,734,950 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI

Selenon
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	146,748,638 - 146,764,656 (-)	NCBI
Rnor_6.0 Ensembl	5	152,750,284 - 152,762,165 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	152,748,497 - 152,765,489 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	156,534,095 - 156,553,701 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	153,295,598 - 153,308,305 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	153,305,727 - 153,317,685 (-)	NCBI
Celera	5	145,163,547 - 145,177,184 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Selenon
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955452	5,295,716 - 5,311,113 (+)	NCBI	ChiLan1.0	ChiLan1.0

SELENON
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	74,134,448 - 74,149,585 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Selenon
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936474	10,381,646 - 10,396,638 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SELENON
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	83,246,934 - 83,262,748 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	76,814,410 - 76,821,459 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SELENON
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	106,953,286 - 106,971,249 (-)	NCBI

Selenon
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	9,892,161 - 9,905,984 (+)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034958662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	SSBP01000239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSPPAT00000040568 ⟹ ENSPPAP00000017849

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	26,127,125 - 26,141,745 (+)	Ensembl

RefSeq Acc Id:

XM_034958662 ⟹ XP_034814553

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	1	25,058,907 - 25,076,817 (+)	NCBI

RefSeq Acc Id:

XM_034958665 ⟹ XP_034814556

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
Mhudiblu_PPA_v0	1	25,058,907 - 25,076,817 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034814553	(Get FASTA)	NCBI Sequence Viewer
	XP_034814556	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_034814553 ⟸ XM_034958662
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_034814556 ⟸ XM_034958665
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSPPAP00000017849 ⟸ ENSPPAT00000040568

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000032038	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSPPAP00000017849	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000040568	UniProtKB/TrEMBL
InterPro	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	SELENON	ENTREZGENE
PROSITE	EF_HAND_2	UniProtKB/TrEMBL
UniProt	A0A2R9ASK6_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM