LOC100986306 (zinc finger protein 563) - Rat Genome Database

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Gene: LOC100986306 (zinc finger protein 563) Pan paniscus
Analyze
Symbol: LOC100986306 (Ensembl: ZNF563)
Name: zinc finger protein 563
RGD ID: 11833573
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ZNF563
RGD Orthologs
Human
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,242,609 - 17,258,910 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,242,897 - 16,260,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,876,162 - 11,892,400 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,638,203 - 12,653,371 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,638,203 - 12,653,371 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100986306
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,242,609 - 17,258,910 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,242,897 - 16,260,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,876,162 - 11,892,400 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11912,638,203 - 12,653,371 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1912,638,203 - 12,653,371 (-)Ensemblpanpan1.1panPan2
ZNF563
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,317,477 - 12,347,390 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,317,477 - 12,333,720 (-)EnsemblGRCh38hg38GRCh38
GRCh371912,428,291 - 12,444,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,289,291 - 12,305,502 (-)NCBINCBI36Build 36hg18NCBI36
Build 341912,289,305 - 12,305,502NCBI
Celera1912,322,117 - 12,338,360 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1912,003,118 - 12,019,361 (-)NCBIHuRef
CHM1_11912,428,574 - 12,444,817 (-)NCBICHM1_1
T2T-CHM13v2.01912,445,840 - 12,475,737 (-)NCBIT2T-CHM13v2.0
ZNF563
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,127,495 - 11,138,817 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660748,674,736 - 8,687,148 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000060124   ⟹   ENSPPAP00000037225
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1912,638,203 - 12,653,371 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000060128   ⟹   ENSPPAP00000037229
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1912,638,296 - 12,642,416 (-)Ensembl
RefSeq Acc Id: XM_008966349   ⟹   XP_008964597
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,242,609 - 17,258,891 (-)NCBI
NHGRI_mPanPan11916,242,897 - 16,259,171 (-)NCBI
Mhudiblu_PPA_v01911,876,162 - 11,892,391 (-)NCBI
PanPan1.11912,638,203 - 12,653,371 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034945450   ⟹   XP_034801341
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22017,242,609 - 17,258,910 (-)NCBI
NHGRI_mPanPan11916,242,897 - 16,260,876 (-)NCBI
Mhudiblu_PPA_v01911,876,162 - 11,892,400 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008964597 (Get FASTA)   NCBI Sequence Viewer  
  XP_034801341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000037225.1
  ENSPPAP00000037229.1
Reference Protein Sequences
RefSeq Acc Id: XP_008964597   ⟸   XM_008966349
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034801341   ⟸   XM_034945450
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000037229   ⟸   ENSPPAT00000060128
RefSeq Acc Id: ENSPPAP00000037225   ⟸   ENSPPAT00000060124
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041371 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060124.1 UniProtKB/TrEMBL
  ENSPPAT00000060128.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC100986306 ENTREZGENE
PANTHER GENE 10130-RELATED UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9C5P0_PANPA UniProtKB/TrEMBL
  A0A2R9C615_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100986306  zinc finger protein 563  ZNF563  zinc finger protein 563  Symbol and/or name change 5135510 APPROVED
2020-07-01 ZNF563  zinc finger protein 563  LOC100986306  zinc finger protein 563  Symbol and/or name change 5135510 APPROVED