MTMR1 (myotubularin related protein 1) - Rat Genome Database

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Gene: MTMR1 (myotubularin related protein 1) Pan paniscus
Analyze
Symbol: MTMR1
Name: myotubularin related protein 1
RGD ID: 11832408
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN regulation of phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); centronuclear myopathy X-linked (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X150,831,189 - 150,902,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X150,834,798 - 150,906,190 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X140,343,740 - 140,415,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X150,281,374 - 150,346,900 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX150,279,183 - 150,346,900 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MTMR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X150,831,189 - 150,902,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X150,834,798 - 150,906,190 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X140,343,740 - 140,415,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X150,281,374 - 150,346,900 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX150,279,183 - 150,346,900 (+)Ensemblpanpan1.1panPan2
MTMR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X150,692,962 - 150,765,108 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX150,692,971 - 150,765,108 (+)EnsemblGRCh38hg38GRCh38
GRCh37X149,861,435 - 149,933,581 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X149,612,527 - 149,684,233 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X149,532,414 - 149,604,136NCBI
CeleraX150,109,440 - 150,181,123 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX138,746,677 - 138,793,029 (+)NCBIHuRef
CHM1_1X149,736,219 - 149,807,918 (+)NCBICHM1_1
T2T-CHM13v2.0X148,960,611 - 149,032,751 (+)NCBIT2T-CHM13v2.0
Mtmr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X70,408,332 - 70,462,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX70,408,366 - 70,462,802 (+)EnsemblGRCm39 Ensembl
GRCm38X71,364,760 - 71,419,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,364,760 - 71,419,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X68,617,935 - 68,672,371 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X67,625,316 - 67,679,752 (+)NCBIMGSCv36mm8
CeleraX62,344,835 - 62,399,305 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX36.75NCBI
Mtmr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818229,390 - 262,893 (+)NCBIGRCr8
mRatBN7.218215,031 - 248,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18215,089 - 248,541 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx18230,016 - 263,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,017,853 - 1,051,318 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018231,923 - 265,389 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.018291,785 - 325,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18291,780 - 325,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018337,401 - 371,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418205,546 - 238,997 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.118205,641 - 237,603 (+)NCBI
Celera18210,086 - 243,538 (+)NCBICelera
Cytogenetic Map18p13NCBI
Mtmr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554986,462,626 - 6,528,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBIChiLan1.0ChiLan1.0
MTMR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X118,936,865 - 118,999,630 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX118,937,470 - 118,999,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX104,316,768 - 104,380,906 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X121,155,483 - 121,219,628 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX121,155,477 - 121,230,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X117,881,398 - 117,945,410 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X120,359,465 - 120,423,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X120,241,922 - 120,305,948 (+)NCBIUU_Cfam_GSD_1.0
Mtmr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,483,467 - 116,562,518 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367141,693,935 - 1,772,978 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367141,693,919 - 1,772,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,394,921 - 122,453,905 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,394,768 - 122,455,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X140,009,688 - 140,070,233 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X125,276,674 - 125,354,065 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX125,281,758 - 125,354,377 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606562,977,776 - 63,031,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249231,072,957 - 1,143,182 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249231,073,009 - 1,143,183 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052422   ⟹   ENSPPAP00000029572
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX150,279,183 - 150,344,747 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052435   ⟹   ENSPPAP00000029584
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX150,281,371 - 150,346,900 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052437   ⟹   ENSPPAP00000029587
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX150,281,371 - 150,346,900 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052439   ⟹   ENSPPAP00000029589
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX150,281,371 - 150,317,631 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000052441   ⟹   ENSPPAP00000029591
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX150,296,645 - 150,346,900 (+)Ensembl
RefSeq Acc Id: XM_034949811   ⟹   XP_034805702
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X150,831,189 - 150,902,584 (+)NCBI
NHGRI_mPanPan1X150,834,801 - 150,906,190 (+)NCBI
Mhudiblu_PPA_v0X140,343,745 - 140,415,134 (+)NCBI
RefSeq Acc Id: XM_034949813   ⟹   XP_034805704
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X150,831,190 - 150,902,584 (+)NCBI
NHGRI_mPanPan1X150,834,801 - 150,906,190 (+)NCBI
Mhudiblu_PPA_v0X140,343,746 - 140,415,134 (+)NCBI
RefSeq Acc Id: XM_034949814   ⟹   XP_034805705
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X150,831,190 - 150,902,584 (+)NCBI
NHGRI_mPanPan1X150,834,801 - 150,906,190 (+)NCBI
Mhudiblu_PPA_v0X140,343,746 - 140,415,134 (+)NCBI
RefSeq Acc Id: XM_034949815   ⟹   XP_034805706
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X150,831,190 - 150,902,584 (+)NCBI
NHGRI_mPanPan1X150,834,801 - 150,906,190 (+)NCBI
Mhudiblu_PPA_v0X140,343,746 - 140,415,134 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034805702   ⟸   XM_034949811
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BMD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805705   ⟸   XM_034949814
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BMD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805704   ⟸   XM_034949813
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BMD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805706   ⟸   XM_034949815
- Peptide Label: isoform X4
- UniProtKB: A0A2R9BMF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000029572   ⟸   ENSPPAT00000052422
RefSeq Acc Id: ENSPPAP00000029587   ⟸   ENSPPAT00000052437
RefSeq Acc Id: ENSPPAP00000029584   ⟸   ENSPPAT00000052435
RefSeq Acc Id: ENSPPAP00000029591   ⟸   ENSPPAT00000052441
RefSeq Acc Id: ENSPPAP00000029589   ⟸   ENSPPAT00000052439
Protein Domains
Myotubularin phosphatase   Tyrosine specific protein phosphatases


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037780 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052422.1 UniProtKB/TrEMBL
  ENSPPAT00000052435.1 UniProtKB/TrEMBL
  ENSPPAT00000052437.1 UniProtKB/TrEMBL
  ENSPPAT00000052439.1 UniProtKB/TrEMBL
  ENSPPAT00000052441.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  MTMR1 UniProtKB/TrEMBL
  MTMR1_PH-GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
NCBI Gene MTMR1 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF40 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A2R9BIT8_PANPA UniProtKB/TrEMBL
  A0A2R9BIU2_PANPA UniProtKB/TrEMBL
  A0A2R9BMD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BMF0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BSL1_PANPA UniProtKB/TrEMBL