CLDN7 (claudin 7) - Rat Genome Database
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Gene: CLDN7 (claudin 7) Pan paniscus
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Symbol: CLDN7
Name: claudin 7
RGD ID: 11831240
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of cell adhesion (ortholog); negative regulation of protein-containing complex assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); dyskeratosis congenita (ortholog); Neoplasm Metastasis (ortholog); FOUND IN apicolateral plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: claudin-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,277,313 - 7,281,859 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,277,313 - 7,281,859 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,289,766 - 7,292,433 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLDN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,277,313 - 7,281,859 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,277,313 - 7,281,859 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,289,766 - 7,292,433 (-)NCBIMhudiblu_PPA_v0panPan3
CLDN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,259,903 - 7,263,983 (-)EnsemblGRCh38hg38GRCh38
GRCh38177,259,903 - 7,263,213 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,163,222 - 7,166,532 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,103,946 - 7,106,519 (-)NCBINCBI36hg18NCBI36
Build 34177,104,183 - 7,106,513NCBI
Celera177,187,867 - 7,191,157 (-)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,054,628 - 7,057,918 (-)NCBIHuRef
CHM1_1177,172,020 - 7,175,309 (-)NCBICHM1_1
Cldn7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,855,605 - 69,858,712 (+)NCBIGRCm39mm39
GRCm39 Ensembl1169,855,605 - 69,858,711 (+)Ensembl
GRCm381169,964,779 - 69,967,886 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,964,779 - 69,967,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,779,003 - 69,781,380 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,781,696 - 69,784,073 (+)NCBImm8
Celera1177,513,435 - 77,515,812 (+)NCBICelera
Cytogenetic Map11B3NCBI
Cldn7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,689,684 - 54,692,177 (+)NCBI
Rnor_6.0 Ensembl1056,576,428 - 56,578,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01056,576,326 - 56,578,632 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,321,522 - 56,323,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,810,947 - 56,813,134 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,825,014 - 56,826,754 (+)NCBI
Celera1053,843,619 - 53,845,806 (+)NCBICelera
Cytogenetic Map10q24NCBI
Cldn7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,652,093 - 9,654,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,652,093 - 9,654,291 (+)NCBIChiLan1.0ChiLan1.0
CLDN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,224,040 - 32,226,168 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,223,985 - 32,225,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936595550,359 - 552,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,612,507 - 52,628,362 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,612,517 - 52,628,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,822,459 - 54,828,675 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,632,695 - 6,635,994 (-)NCBI
ChlSab1.1 Ensembl166,630,412 - 6,635,327 (-)Ensembl
Cldn7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,873,555 - 9,875,743 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008962464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000046847   ⟹   ENSPPAP00000024022
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,277,313 - 7,281,859 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046849   ⟹   ENSPPAP00000024024
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl177,277,894 - 7,280,699 (-)Ensembl
RefSeq Acc Id: XM_008962464   ⟹   XP_008960712
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1177,277,313 - 7,281,237 (-)NCBI
Mhudiblu_PPA_v0177,289,766 - 7,292,433 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008960712 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008960712   ⟸   XM_008962464
- Sequence:
RefSeq Acc Id: ENSPPAP00000024024   ⟸   ENSPPAT00000046849
RefSeq Acc Id: ENSPPAP00000024022   ⟸   ENSPPAT00000046847


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035150 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000024022 UniProtKB/TrEMBL
  ENSPPAP00000024024 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046847 UniProtKB/TrEMBL
  ENSPPAT00000046849 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin7 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report pps:100989187 UniProtKB/TrEMBL
NCBI Gene CLDN7 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN7 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A2R9B348_PANPA UniProtKB/TrEMBL
  A0A2R9B9V0_PANPA UniProtKB/TrEMBL