CPNE5 (copine 5) - Rat Genome Database

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Gene: CPNE5 (copine 5) Pan paniscus
Analyze
Symbol: CPNE5
Name: copine 5
RGD ID: 11825722
Description: ENCODES a protein that exhibits calcium-dependent phospholipid binding (inferred); INVOLVED IN cellular response to calcium ion (inferred); positive regulation of dendrite extension (inferred); ASSOCIATED WITH genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN neuron projection (inferred); neuronal cell body (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: copine-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,194,483 - 51,308,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,064,099 - 47,178,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,287,945 - 36,402,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,499,020 - 37,597,583 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,500,515 - 37,597,281 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CPNE5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,194,483 - 51,308,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,064,099 - 47,178,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,287,945 - 36,402,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,499,020 - 37,597,583 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,500,515 - 37,597,281 (-)Ensemblpanpan1.1panPan2
CPNE5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,740,775 - 36,839,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,740,775 - 36,839,444 (-)EnsemblGRCh38hg38GRCh38
GRCh37636,708,552 - 36,807,774 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,816,533 - 36,915,198 (-)NCBINCBI36Build 36hg18NCBI36
Build 34636,816,532 - 36,915,198NCBI
Celera638,263,598 - 38,362,252 (-)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,426,825 - 36,525,533 (-)NCBIHuRef
CHM1_1636,710,493 - 36,809,144 (-)NCBICHM1_1
T2T-CHM13v2.0636,561,362 - 36,660,596 (-)NCBIT2T-CHM13v2.0
Cpne5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,375,495 - 29,456,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,374,530 - 29,457,141 (-)EnsemblGRCm39 Ensembl
GRCm381729,156,521 - 29,237,790 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,155,556 - 29,238,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,293,466 - 29,374,735 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,883,833 - 28,964,802 (-)NCBIMGSCv36mm8
Celera1729,707,300 - 29,787,838 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.14NCBI
Cpne5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,208,389 - 7,290,959 (-)NCBIGRCr8
mRatBN7.2207,206,742 - 7,289,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,206,742 - 7,288,883 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,917,922 - 7,999,959 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,279,786 - 7,361,822 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,754,579 - 7,836,796 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,419,033 - 6,500,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,419,033 - 6,500,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,664,244 - 8,745,448 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,453,643 - 7,535,366 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,455,846 - 7,535,503 (-)NCBI
Celera208,756,578 - 8,838,868 (-)NCBICelera
Cytogenetic Map20p12NCBI
Cpne5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,153,486 - 6,219,096 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554376,153,486 - 6,218,774 (+)NCBIChiLan1.0ChiLan1.0
CPNE5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,812,460 - 5,902,467 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,811,503 - 5,910,343 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,831,510 - 5,921,508 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0126,161,527 - 6,251,534 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,161,527 - 6,251,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,816,127 - 5,906,521 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,895,662 - 5,985,995 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,993,806 - 6,084,221 (-)NCBIUU_Cfam_GSD_1.0
Cpne5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,286,989 - 41,376,974 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,584,131 - 22,673,264 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,584,837 - 22,673,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPNE5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,409,688 - 32,508,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,396,735 - 32,510,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,301,474 - 37,412,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPNE5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,296,046 - 35,392,450 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,296,196 - 35,390,970 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,687,767 - 36,784,175 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpne5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,995,413 - 21,068,130 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475420,995,407 - 21,067,853 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003818896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008972310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000009083   ⟹   ENSPPAP00000001822
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,500,515 - 37,597,281 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000009091   ⟹   ENSPPAP00000001828
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl637,500,515 - 37,597,281 (-)Ensembl
RefSeq Acc Id: XM_003818896   ⟹   XP_003818944
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,209,846 - 51,308,896 (-)NCBI
NHGRI_mPanPan1647,079,466 - 47,178,639 (-)NCBI
Mhudiblu_PPA_v0636,303,304 - 36,402,354 (-)NCBI
PanPan1.1637,499,020 - 37,597,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972310   ⟹   XP_008970558
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,209,846 - 51,308,896 (-)NCBI
NHGRI_mPanPan1647,079,466 - 47,178,640 (-)NCBI
Mhudiblu_PPA_v0636,303,304 - 36,402,354 (-)NCBI
PanPan1.1637,499,020 - 37,597,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024929010   ⟹   XP_024784778
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,266,268 - 51,308,913 (-)NCBI
NHGRI_mPanPan1647,136,015 - 47,178,660 (-)NCBI
Mhudiblu_PPA_v0636,359,739 - 36,402,371 (-)NCBI
PanPan1.1637,555,402 - 37,597,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034961984   ⟹   XP_034817875
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,207,526 - 51,308,907 (-)NCBI
NHGRI_mPanPan1647,077,146 - 47,178,654 (-)NCBI
Mhudiblu_PPA_v0636,300,985 - 36,402,366 (-)NCBI
RefSeq Acc Id: XM_034961985   ⟹   XP_034817876
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,207,526 - 51,308,908 (-)NCBI
NHGRI_mPanPan1647,077,146 - 47,178,655 (-)NCBI
Mhudiblu_PPA_v0636,300,985 - 36,402,367 (-)NCBI
RefSeq Acc Id: XM_034961986   ⟹   XP_034817877
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,207,526 - 51,308,907 (-)NCBI
NHGRI_mPanPan1647,077,146 - 47,178,654 (-)NCBI
Mhudiblu_PPA_v0636,300,985 - 36,402,367 (-)NCBI
RefSeq Acc Id: XM_034961988   ⟹   XP_034817879
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,194,483 - 51,308,904 (-)NCBI
NHGRI_mPanPan1647,064,099 - 47,178,650 (-)NCBI
Mhudiblu_PPA_v0636,287,945 - 36,402,363 (-)NCBI
RefSeq Acc Id: XM_034961989   ⟹   XP_034817880
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,196,201 - 51,308,902 (-)NCBI
NHGRI_mPanPan1647,065,820 - 47,178,648 (-)NCBI
Mhudiblu_PPA_v0636,289,665 - 36,402,362 (-)NCBI
RefSeq Acc Id: XM_034961992   ⟹   XP_034817883
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,207,526 - 51,234,826 (-)NCBI
NHGRI_mPanPan1647,077,146 - 47,104,607 (-)NCBI
Mhudiblu_PPA_v0636,300,985 - 36,328,330 (-)NCBI
RefSeq Acc Id: XM_055113547   ⟹   XP_054969522
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,209,846 - 51,308,896 (-)NCBI
NHGRI_mPanPan1647,079,466 - 47,178,640 (-)NCBI
RefSeq Acc Id: XM_055113548   ⟹   XP_054969523
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,207,526 - 51,307,627 (-)NCBI
NHGRI_mPanPan1647,077,146 - 47,177,378 (-)NCBI
RefSeq Acc Id: XM_057302488   ⟹   XP_057158471
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2551,209,846 - 51,234,806 (-)NCBI
NHGRI_mPanPan1647,079,466 - 47,104,586 (-)NCBI
RefSeq Acc Id: XP_003818944   ⟸   XM_003818896
- Peptide Label: isoform X7
- UniProtKB: A0A2R8ZAE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008970558   ⟸   XM_008972310
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZAE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024784778   ⟸   XM_024929010
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_034817879   ⟸   XM_034961988
- Peptide Label: isoform X6
- UniProtKB: A0A2R8ZAE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817880   ⟸   XM_034961989
- Peptide Label: isoform X8
- UniProtKB: A0A2R8ZAE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034817877   ⟸   XM_034961986
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034817876   ⟸   XM_034961985
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034817875   ⟸   XM_034961984
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034817883   ⟸   XM_034961992
- Peptide Label: isoform X10
RefSeq Acc Id: ENSPPAP00000001822   ⟸   ENSPPAT00000009083
RefSeq Acc Id: ENSPPAP00000001828   ⟸   ENSPPAT00000009091
RefSeq Acc Id: XP_054969523   ⟸   XM_055113548
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054969522   ⟸   XM_055113547
- Peptide Label: isoform X5
- UniProtKB: A0A2R8ZAE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057158471   ⟸   XM_057302488
- Peptide Label: isoform X11
Protein Domains
C2   VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000007557 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000009083.1 UniProtKB/TrEMBL
  ENSPPAT00000009091.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2B_Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  Copine_C UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene CPNE5 ENTREZGENE
PANTHER COPINE-5 UniProtKB/TrEMBL
  PTHR10857 UniProtKB/TrEMBL
Pfam Copine UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A2R8ZAE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZE19_PANPA UniProtKB/TrEMBL