SLC23A3 (solute carrier family 23 member 3) - Rat Genome Database

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Gene: SLC23A3 (solute carrier family 23 member 3) Pan paniscus
Analyze
Symbol: SLC23A3
Name: solute carrier family 23 member 3
RGD ID: 11824658
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN hypoxanthine transport (inferred); organic substance transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 23 (nucleobase transporters), member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,792,092 - 121,800,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,806,659 - 121,815,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,418,754 - 106,427,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,011,825 - 225,020,503 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,011,825 - 225,020,503 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC23A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,792,092 - 121,800,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,806,659 - 121,815,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,418,754 - 106,427,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,011,825 - 225,020,503 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,011,825 - 225,020,503 (-)Ensemblpanpan1.1panPan2
SLC23A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,161,465 - 219,170,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,161,465 - 219,170,095 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,026,187 - 220,034,751 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,734,431 - 219,742,959 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,851,694 - 219,860,220NCBI
Celera2213,795,898 - 213,804,533 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,879,743 - 211,888,378 (-)NCBIHuRef
CHM1_12220,033,513 - 220,042,159 (-)NCBICHM1_1
T2T-CHM13v2.02219,649,889 - 219,658,452 (-)NCBIT2T-CHM13v2.0
Slc23a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,102,185 - 75,112,113 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,102,185 - 75,110,534 (-)EnsemblGRCm39 Ensembl
GRCm38175,125,541 - 75,135,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,125,541 - 75,133,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,122,115 - 75,130,464 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,008,751 - 75,017,098 (-)NCBIMGSCv36mm8
Celera175,616,138 - 75,624,859 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.6NCBI
Slc23a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,071,286 - 84,081,951 (-)NCBIGRCr8
mRatBN7.2976,622,621 - 76,633,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,622,800 - 76,631,366 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,067,277 - 85,075,848 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,196,181 - 90,204,752 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,582,381 - 88,590,952 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,328,007 - 82,338,576 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,328,173 - 82,336,806 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,097,270 - 82,107,837 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,409,051 - 74,417,617 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,556,156 - 74,564,594 (-)NCBI
Celera974,193,265 - 74,201,831 (-)NCBICelera
Cytogenetic Map9q33NCBI
Slc23a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,271,343 - 14,278,233 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,271,343 - 14,278,233 (+)NCBIChiLan1.0ChiLan1.0
SLC23A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,720,935 - 25,727,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,720,809 - 25,732,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,546,960 - 26,553,851 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,736,008 - 25,743,224 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,736,738 - 25,750,868 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,640,435 - 25,647,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,575,679 - 25,582,566 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,596,346 - 25,603,495 (-)NCBIUU_Cfam_GSD_1.0
Slc23a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,236,170 - 175,244,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,578,993 - 1,585,454 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,578,977 - 1,585,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC23A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,195,246 - 121,203,985 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,105,800 - 121,203,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,143,875 - 134,232,493 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC23A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,072,114 - 105,078,809 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604094,317,464 - 94,328,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc23a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,852,454 - 5,858,373 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248235,852,164 - 5,858,938 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000061199   ⟹   ENSPPAP00000038296
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B225,011,825 - 225,020,503 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000061202   ⟹   ENSPPAP00000038299
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B225,011,825 - 225,020,503 (-)Ensembl
RefSeq Acc Id: XM_003818634   ⟹   XP_003818682
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,792,092 - 121,800,784 (-)NCBI
NHGRI_mPanPan12B121,806,659 - 121,815,878 (-)NCBI
Mhudiblu_PPA_v02B106,418,754 - 106,427,931 (-)NCBI
PanPan1.12B225,011,825 - 225,020,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003818635   ⟹   XP_003818683
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,792,092 - 121,800,784 (-)NCBI
NHGRI_mPanPan12B121,806,659 - 121,815,878 (-)NCBI
Mhudiblu_PPA_v02B106,419,629 - 106,427,931 (-)NCBI
PanPan1.12B225,011,825 - 225,020,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063595561   ⟹   XP_063451631
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,792,092 - 121,800,913 (-)NCBI
RefSeq Acc Id: XM_063595562   ⟹   XP_063451632
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,792,092 - 121,800,784 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003818682 (Get FASTA)   NCBI Sequence Viewer  
  XP_003818683 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451631 (Get FASTA)   NCBI Sequence Viewer  
  XP_063451632 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000038296.1
  ENSPPAP00000038299.1
Reference Protein Sequences
RefSeq Acc Id: XP_003818683   ⟸   XM_003818635
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C8Y8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003818682   ⟸   XM_003818634
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C8M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000038299   ⟸   ENSPPAT00000061202
RefSeq Acc Id: ENSPPAP00000038296   ⟸   ENSPPAT00000061199
RefSeq Acc Id: XP_063451631   ⟸   XM_063595561
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063451632   ⟸   XM_063595562
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041866 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061199.1 UniProtKB/TrEMBL
  ENSPPAT00000061202.1 UniProtKB/TrEMBL
InterPro NCS2 UniProtKB/TrEMBL
NCBI Gene SLC23A3 ENTREZGENE
PANTHER PTHR11119:SF57 UniProtKB/TrEMBL
  XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Xan_ur_permease UniProtKB/TrEMBL
UniProt A0A2R9C8M6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C8Y8 ENTREZGENE, UniProtKB/TrEMBL