NDUFB5 (NADH:ubiquinone oxidoreductase subunit B5) - Rat Genome Database

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Gene: NDUFB5 (NADH:ubiquinone oxidoreductase subunit B5) Pan paniscus
Analyze
Symbol: NDUFB5
Name: NADH:ubiquinone oxidoreductase subunit B5
RGD ID: 11824043
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH acute myocardial infarction (ortholog); COVID-19 (ortholog); Currarino syndrome (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22177,473,038 - 177,492,847 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13177,477,755 - 177,500,716 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03176,636,937 - 176,659,813 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13184,807,246 - 184,827,011 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,807,246 - 184,827,011 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NDUFB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22177,473,038 - 177,492,847 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13177,477,755 - 177,500,716 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03176,636,937 - 176,659,813 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13184,807,246 - 184,827,011 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,807,246 - 184,827,011 (+)Ensemblpanpan1.1panPan2
NDUFB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,604,794 - 179,627,647 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3179,604,690 - 179,627,647 (+)EnsemblGRCh38hg38GRCh38
GRCh373179,322,582 - 179,345,435 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,805,269 - 180,824,982 (+)NCBINCBI36Build 36hg18NCBI36
Build 343180,805,276 - 180,824,989NCBI
Celera3177,753,453 - 177,773,165 (+)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3176,726,362 - 176,746,074 (+)NCBIHuRef
CHM1_13179,285,675 - 179,305,394 (+)NCBICHM1_1
T2T-CHM13v2.03182,408,634 - 182,431,486 (+)NCBIT2T-CHM13v2.0
Ndufb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39332,791,206 - 32,805,708 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl332,791,139 - 32,805,715 (+)EnsemblGRCm39 Ensembl
GRCm38332,737,057 - 32,751,559 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,736,990 - 32,751,566 (+)EnsemblGRCm38mm10GRCm38
MGSCv37332,635,985 - 32,650,481 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36332,928,612 - 32,943,108 (+)NCBIMGSCv36mm8
Celera332,652,429 - 32,659,163 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map315.85NCBI
Ndufb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82117,447,605 - 117,461,943 (+)NCBIGRCr8
mRatBN7.22115,519,248 - 115,533,589 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2115,519,154 - 115,533,589 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2122,125,934 - 122,140,251 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02120,238,567 - 120,252,884 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02114,940,640 - 114,954,970 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02119,139,717 - 119,153,753 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2119,139,717 - 119,153,753 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02138,791,054 - 138,804,599 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42118,946,438 - 118,963,186 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12118,891,399 - 118,907,938 (+)NCBI
Celera2110,622,838 - 110,637,001 (+)NCBICelera
Cytogenetic Map2q24NCBI
Ndufb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554208,778,271 - 8,793,634 (+)NCBIChiLan1.0ChiLan1.0
NDUFB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13413,020,240 - 13,041,669 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3413,020,345 - 13,040,163 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3417,162,291 - 17,182,256 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03412,917,745 - 12,938,199 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3412,917,849 - 12,942,219 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13412,968,894 - 12,989,311 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03412,951,820 - 12,971,775 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03413,191,684 - 13,211,646 (+)NCBIUU_Cfam_GSD_1.0
Ndufb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,672,920 - 109,682,771 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365663,537,609 - 3,547,769 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365663,537,983 - 3,547,807 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,656,503 - 117,678,509 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,656,411 - 117,671,515 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213126,750,842 - 126,765,699 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1159,804,081 - 9,822,346 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl159,804,383 - 9,822,284 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606318,675,489 - 18,693,790 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473057,349,079 - 57,369,340 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473057,349,893 - 57,368,278 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041467   ⟹   ENSPPAP00000018728
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3184,807,246 - 184,827,011 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000041473   ⟹   ENSPPAP00000018733
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3184,807,246 - 184,827,011 (+)Ensembl
RefSeq Acc Id: XM_003831967   ⟹   XP_003832015
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22177,473,038 - 177,492,847 (+)NCBI
NHGRI_mPanPan13177,477,755 - 177,500,716 (+)NCBI
Mhudiblu_PPA_v03176,636,937 - 176,659,813 (+)NCBI
PanPan1.13184,807,246 - 184,827,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008957341   ⟹   XP_008955589
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22177,473,147 - 177,492,847 (+)NCBI
NHGRI_mPanPan13177,477,865 - 177,500,716 (+)NCBI
Mhudiblu_PPA_v03176,636,942 - 176,659,813 (+)NCBI
PanPan1.13184,807,343 - 184,827,011 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008957342   ⟹   XP_008955590
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22177,473,144 - 177,492,847 (+)NCBI
NHGRI_mPanPan13177,477,861 - 177,497,564 (+)NCBI
Mhudiblu_PPA_v03176,636,937 - 176,656,648 (+)NCBI
PanPan1.13184,807,246 - 184,827,011 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003832015 (Get FASTA)   NCBI Sequence Viewer  
  XP_008955589 (Get FASTA)   NCBI Sequence Viewer  
  XP_008955590 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018728
  ENSPPAP00000018728.1
  ENSPPAP00000018733
  ENSPPAP00000018733.1
Reference Protein Sequences
RefSeq Acc Id: XP_003832015   ⟸   XM_003831967
- Peptide Label: isoform X1
- UniProtKB: A0A2R9ANK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955590   ⟸   XM_008957342
- Peptide Label: isoform X3
- UniProtKB: A0A2R9ANK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008955589   ⟸   XM_008957341
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000018728   ⟸   ENSPPAT00000041467
RefSeq Acc Id: ENSPPAP00000018733   ⟸   ENSPPAT00000041473


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032519 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041467.1 UniProtKB/TrEMBL
  ENSPPAT00000041473.1 UniProtKB/TrEMBL
InterPro NADH_UbQ_OxRdtase_B5_su UniProtKB/TrEMBL
KEGG Report pps:100969637 UniProtKB/TrEMBL
NCBI Gene NDUFB5 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 5, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13178 UniProtKB/TrEMBL
Pfam NDUF_B5 UniProtKB/TrEMBL
UniProt A0A2R9ANK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9ANK8 ENTREZGENE, UniProtKB/TrEMBL