FSD1 (fibronectin type III and SPRY domain containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: FSD1 (fibronectin type III and SPRY domain containing 1) Pan paniscus
Analyze
Symbol: FSD1
Name: fibronectin type III and SPRY domain containing 1
RGD ID: 11824017
Description: ENCODES a protein that exhibits identical protein binding (inferred); microtubule binding (inferred); INVOLVED IN cell division (inferred); cytoplasmic microtubule organization (inferred); regulation of cell division (inferred); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); Stomach Neoplasms (ortholog); FOUND IN centrosome (inferred); cleavage furrow (inferred); microtubule (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibronectin type III and SPRY domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,701,598 - 8,722,162 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,931,823 - 7,951,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,327,681 - 3,347,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,274,389 - 4,294,179 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,274,389 - 4,294,179 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FSD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,701,598 - 8,722,162 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,931,823 - 7,951,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,327,681 - 3,347,176 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,274,389 - 4,294,179 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,274,389 - 4,294,179 (+)Ensemblpanpan1.1panPan2
FSD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,304,598 - 4,323,836 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,304,598 - 4,323,843 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,304,595 - 4,323,833 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,255,691 - 4,274,838 (+)NCBINCBI36Build 36hg18NCBI36
Build 34194,255,690 - 4,274,838NCBI
Celera19627,256 - 628,117 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,068,531 - 4,086,554 (+)NCBIHuRef
CHM1_1194,304,209 - 4,323,460 (+)NCBICHM1_1
T2T-CHM13v2.0194,287,878 - 4,307,238 (+)NCBIT2T-CHM13v2.0
Fsd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,293,475 - 56,303,881 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,293,509 - 56,303,881 (+)EnsemblGRCm39 Ensembl
GRCm381755,986,462 - 55,996,883 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1755,986,509 - 55,996,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,125,934 - 56,136,304 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361755,579,804 - 55,590,174 (+)NCBIMGSCv36mm8
Celera1759,405,038 - 59,415,407 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.1NCBI
Fsd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89905,418 - 908,938 (+)NCBIGRCr8
mRatBN7.29818,241 - 821,761 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9818,263 - 828,185 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,265,272 - 1,268,793 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,612,522 - 6,616,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,570,304 - 5,573,825 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0911,076,670 - 11,080,190 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl911,067,369 - 11,080,155 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0910,061,938 - 10,065,458 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,684,706 - 7,688,226 (-)NCBICelera
Cytogenetic Map9q11NCBI
Fsd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554954,549,220 - 4,561,073 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554954,549,067 - 4,561,223 (-)NCBIChiLan1.0ChiLan1.0
FSD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,333,937 - 55,344,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,333,785 - 55,344,843 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,062,100 - 55,080,355 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02055,993,017 - 56,011,507 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,993,071 - 56,004,636 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,053,501 - 55,071,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,534,443 - 55,552,704 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,733,089 - 55,751,345 (-)NCBIUU_Cfam_GSD_1.0
Fsd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,365,410 - 215,373,017 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,461,411 - 2,469,507 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,461,582 - 2,469,373 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,471,744 - 74,485,786 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,471,744 - 74,485,788 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2274,964,692 - 74,978,738 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FSD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,042,375 - 4,059,579 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl64,042,500 - 4,059,600 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,150,841 - 4,166,902 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fsd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,344,068 - 5,359,906 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,347,861 - 5,359,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000056031   ⟹   ENSPPAP00000033161
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl194,274,389 - 4,294,179 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000056034   ⟹   ENSPPAP00000033164
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl194,279,782 - 4,293,890 (+)Ensembl
RefSeq Acc Id: XM_003819276   ⟹   XP_003819324
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2208,701,598 - 8,722,162 (+)NCBI
NHGRI_mPanPan1197,931,823 - 7,951,570 (+)NCBI
Mhudiblu_PPA_v0193,327,685 - 3,347,173 (+)NCBI
PanPan1.1194,274,389 - 4,294,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008972627   ⟹   XP_008970875
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2208,701,635 - 8,722,162 (+)NCBI
NHGRI_mPanPan1197,931,860 - 7,951,570 (+)NCBI
Mhudiblu_PPA_v0193,327,719 - 3,347,173 (+)NCBI
PanPan1.1194,274,421 - 4,294,176 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008972628   ⟹   XP_008970876
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2208,701,598 - 8,722,162 (+)NCBI
NHGRI_mPanPan1197,931,823 - 7,951,570 (+)NCBI
Mhudiblu_PPA_v0193,327,681 - 3,347,176 (+)NCBI
PanPan1.1194,274,389 - 4,294,176 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034945480   ⟹   XP_034801371
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2208,701,610 - 8,722,162 (+)NCBI
NHGRI_mPanPan1197,931,835 - 7,951,570 (+)NCBI
Mhudiblu_PPA_v0193,327,690 - 3,347,173 (+)NCBI
RefSeq Acc Id: XR_004667880
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2208,701,610 - 8,721,902 (+)NCBI
NHGRI_mPanPan1197,931,835 - 7,951,309 (+)NCBI
Mhudiblu_PPA_v0193,327,690 - 3,346,914 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003819324 (Get FASTA)   NCBI Sequence Viewer  
  XP_008970875 (Get FASTA)   NCBI Sequence Viewer  
  XP_008970876 (Get FASTA)   NCBI Sequence Viewer  
  XP_034801371 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033161.1
  ENSPPAP00000033164.1
RefSeq Acc Id: XP_003819324   ⟸   XM_003819276
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008970876   ⟸   XM_008972628
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008970875   ⟸   XM_008972627
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034801371   ⟸   XM_034945480
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000033161   ⟸   ENSPPAT00000056031
RefSeq Acc Id: ENSPPAP00000033164   ⟸   ENSPPAT00000056034
Protein Domains
B30.2/SPRY   COS   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039445 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056031.1 UniProtKB/TrEMBL
  ENSPPAT00000056034.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Bbox_C UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  COS_domain UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  SPRY/PRY_FSD1 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
KEGG Report pps:100967909 UniProtKB/TrEMBL
NCBI Gene FSD1 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED UniProtKB/TrEMBL
  FIBRONECTIN TYPE III AND SPRY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  COS UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART BBC UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A2R9BUN3_PANPA UniProtKB/TrEMBL
  A0A2R9C3L9_PANPA UniProtKB/TrEMBL