SHROOM4 (shroom family member 4) - Rat Genome Database

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Gene: SHROOM4 (shroom family member 4) Pan paniscus
Analyze
Symbol: SHROOM4
Name: shroom family member 4
RGD ID: 11822410
Description: ENCODES a protein that exhibits actin filament binding (inferred); myosin II binding (inferred); INVOLVED IN actin filament organization (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (inferred); actin filament (inferred); adherens junction (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X51,940,087 - 52,188,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X51,945,765 - 52,192,297 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X42,673,968 - 42,974,947 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X50,464,617 - 50,568,075 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX50,464,824 - 50,687,221 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SHROOM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X51,940,087 - 52,188,702 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X51,945,765 - 52,192,297 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X42,673,968 - 42,974,947 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X50,464,617 - 50,568,075 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX50,464,824 - 50,687,221 (-)Ensemblpanpan1.1panPan2
SHROOM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X50,575,534 - 50,814,194 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX50,586,796 - 50,814,302 (-)EnsemblGRCh38hg38GRCh38
GRCh37X50,329,796 - 50,557,194 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X50,351,387 - 50,573,784 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX54,378,231 - 54,600,597 (-)NCBICelera
Cytogenetic MapXp11.22NCBI
HuRefX47,778,364 - 48,000,648 (-)NCBIHuRef
CHM1_1X50,414,359 - 50,636,708 (-)NCBICHM1_1
T2T-CHM13v2.0X49,846,979 - 50,085,560 (-)NCBIT2T-CHM13v2.0
Shroom4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X6,312,012 - 6,549,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX6,311,908 - 6,549,502 (+)EnsemblGRCm39 Ensembl
GRCm38X6,399,949 - 6,637,454 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX6,399,854 - 6,637,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X5,977,263 - 6,210,835 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X5,575,508 - 5,812,930 (+)NCBIMGSCv36mm8
CeleraX4,778,748 - 5,011,260 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX2.85NCBI
Shroom4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X18,537,371 - 18,748,665 (-)NCBIGRCr8
mRatBN7.2X15,869,065 - 16,076,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX15,869,065 - 16,076,869 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX20,679,710 - 20,887,970 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X19,195,300 - 19,403,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X15,460,250 - 15,668,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X16,723,360 - 16,929,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX16,719,803 - 16,929,907 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X17,500,772 - 17,711,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X29,125,307 - 29,334,579 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX15,939,398 - 16,146,959 (-)NCBICelera
Cytogenetic MapXq12NCBI
Shroom4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555431,810,125 - 2,046,144 (-)NCBIChiLan1.0ChiLan1.0
SHROOM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X43,366,921 - 43,639,525 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX43,369,472 - 43,639,302 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX17,743,343 - 18,016,771 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X43,486,469 - 43,759,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX43,487,462 - 43,760,464 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X43,490,284 - 43,763,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X43,478,265 - 43,751,712 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X43,573,217 - 43,846,683 (-)NCBIUU_Cfam_GSD_1.0
Shroom4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X35,828,330 - 36,037,677 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367212,068,731 - 2,166,537 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHROOM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX44,332,620 - 44,543,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X44,301,956 - 44,543,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X49,298,058 - 49,474,957 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHROOM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X47,392,156 - 47,618,816 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX47,397,570 - 47,616,973 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666086984,033 - 1,212,187 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shroom4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248932,373,815 - 2,660,199 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248932,373,847 - 2,660,122 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055142   ⟹   ENSPPAP00000032276
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX50,464,824 - 50,516,024 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055147   ⟹   ENSPPAP00000032281
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX50,469,344 - 50,571,950 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000055153   ⟹   ENSPPAP00000032287
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX50,479,866 - 50,687,221 (-)Ensembl
RefSeq Acc Id: XM_008977084   ⟹   XP_008975332
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X51,965,129 - 52,188,701 (-)NCBI
NHGRI_mPanPan1X51,959,688 - 52,192,295 (-)NCBI
Mhudiblu_PPA_v0X42,752,166 - 42,974,819 (-)NCBI
PanPan1.1X50,464,824 - 50,568,075 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008977089   ⟹   XP_008975337
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X51,965,129 - 52,016,397 (-)NCBI
NHGRI_mPanPan1X51,959,688 - 52,020,000 (-)NCBI
Mhudiblu_PPA_v0X42,752,166 - 42,803,410 (-)NCBI
PanPan1.1X50,464,824 - 50,516,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034950500   ⟹   XP_034806391
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X51,965,129 - 52,188,702 (-)NCBI
NHGRI_mPanPan1X51,959,688 - 52,192,297 (-)NCBI
Mhudiblu_PPA_v0X42,752,166 - 42,974,821 (-)NCBI
RefSeq Acc Id: XR_004668917
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X51,949,946 - 52,188,701 (-)NCBI
NHGRI_mPanPan1X51,953,549 - 52,192,295 (-)NCBI
Mhudiblu_PPA_v0X42,736,982 - 42,974,819 (-)NCBI
RefSeq Acc Id: XR_004668918
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X51,940,087 - 52,188,701 (-)NCBI
NHGRI_mPanPan1X51,945,765 - 52,192,295 (-)NCBI
Mhudiblu_PPA_v0X42,730,030 - 42,974,819 (-)NCBI
RefSeq Acc Id: XR_612672
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X51,956,081 - 52,188,701 (-)NCBI
NHGRI_mPanPan1X51,959,678 - 52,192,295 (-)NCBI
Mhudiblu_PPA_v0X42,751,932 - 42,974,819 (-)NCBI
PanPan1.1X50,464,617 - 50,568,075 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008975332 (Get FASTA)   NCBI Sequence Viewer  
  XP_008975337 (Get FASTA)   NCBI Sequence Viewer  
  XP_034806391 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032276.1
  ENSPPAP00000032281.1
  ENSPPAP00000032287.1
Reference Protein Sequences
RefSeq Acc Id: XP_008975332   ⟸   XM_008977084
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BS68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008975337   ⟸   XM_008977089
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BS68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034806391   ⟸   XM_034950500
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BS68 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000032276   ⟸   ENSPPAT00000055142
RefSeq Acc Id: ENSPPAP00000032281   ⟸   ENSPPAT00000055147
RefSeq Acc Id: ENSPPAP00000032287   ⟸   ENSPPAT00000055153
Protein Domains
ASD2   PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055142.1 UniProtKB/TrEMBL
  ENSPPAT00000055147.1 UniProtKB/TrEMBL
  ENSPPAT00000055153.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  6.10.250.3120 UniProtKB/TrEMBL
InterPro ASD2_dom UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  Shroom_fam UniProtKB/TrEMBL
NCBI Gene SHROOM4 ENTREZGENE
PANTHER PTHR15012 UniProtKB/TrEMBL
  PTHR15012:SF35 UniProtKB/TrEMBL
Pfam ASD2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PROSITE ASD2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A2R9BRH9_PANPA UniProtKB/TrEMBL
  A0A2R9BS65_PANPA UniProtKB/TrEMBL
  A0A2R9BS68 ENTREZGENE, UniProtKB/TrEMBL