FNTB (farnesyltransferase, CAAX box, beta) - Rat Genome Database

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Gene: FNTB (farnesyltransferase, CAAX box, beta) Pan paniscus
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Symbol: FNTB
Name: farnesyltransferase, CAAX box, beta
RGD ID: 11821861
Description: ENCODES a protein that exhibits farnesyltranstransferase activity (ortholog); peptide binding (ortholog); protein farnesyltransferase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); fibroblast proliferation (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH molybdenum cofactor deficiency type C (ortholog); FOUND IN microtubule associated complex (inferred); protein farnesyltransferase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11464,448,173 - 64,522,632 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1464,448,170 - 64,522,632 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01445,568,511 - 45,643,952 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
FNTB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11464,448,173 - 64,522,632 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1464,448,170 - 64,522,632 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01445,568,511 - 45,643,952 (+)NCBIMhudiblu_PPA_v0panPan3
FNTB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381464,986,895 - 65,062,650 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1464,986,895 - 65,062,652 (+)EnsemblGRCh38hg38GRCh38
GRCh371465,453,613 - 65,529,368 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361464,523,260 - 64,599,123 (+)NCBINCBI36hg18NCBI36
Build 341464,523,259 - 64,599,122NCBI
Celera1445,508,091 - 45,583,963 (+)NCBI
Cytogenetic Map14q23.3NCBI
HuRef1445,622,838 - 45,698,636 (+)NCBIHuRef
CHM1_11465,391,707 - 65,467,529 (+)NCBICHM1_1
Fntb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391276,884,014 - 76,968,186 (+)NCBIGRCm39mm39
GRCm39 Ensembl1276,812,363 - 76,968,186 (+)Ensembl
GRCm381276,837,400 - 76,921,412 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1276,765,589 - 76,921,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv371277,938,454 - 78,022,399 (+)NCBIGRCm37mm9NCBIm37
MGSCv361277,756,307 - 77,840,252 (+)NCBImm8
Celera1277,919,908 - 78,003,339 (+)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1233.73NCBI
Fntb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2695,536,540 - 95,619,587 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl695,470,683 - 95,619,586 (+)Ensembl
Rnor_6.0699,883,959 - 99,966,988 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,883,959 - 99,966,988 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06109,278,424 - 109,361,572 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4699,427,967 - 99,511,373 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1699,431,422 - 99,514,829 (+)NCBI
Celera693,954,767 - 94,037,720 (+)NCBICelera
Cytogenetic Map6q24NCBI
Fntb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554664,858,628 - 4,940,247 (-)NCBIChiLan1.0ChiLan1.0
FNTB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1839,364,067 - 39,429,129 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha839,056,154 - 39,121,139 (+)NCBI
ROS_Cfam_1.0839,586,882 - 39,651,960 (+)NCBI
UMICH_Zoey_3.1839,207,903 - 39,272,691 (+)NCBI
UNSW_CanFamBas_1.0839,280,638 - 39,345,195 (+)NCBI
UU_Cfam_GSD_1.0839,639,759 - 39,704,379 (+)NCBI
LOC101978376
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864065,477,747 - 65,554,529 (-)NCBI
SpeTri2.0NW_0049364958,637,103 - 8,713,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNTB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1789,052,451 - 89,131,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2795,473,097 - 95,507,362 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FNTB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12442,197,998 - 42,275,863 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2442,198,704 - 42,276,898 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605330,373,890 - 30,450,958 (+)NCBIVero_WHO_p1.0
Fntb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473435,965,240 - 36,051,685 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039946   ⟹   ENSPPAP00000017244
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1464,448,170 - 64,522,632 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039953   ⟹   ENSPPAP00000017251
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1464,448,586 - 64,505,475 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000039955   ⟹   ENSPPAP00000017253
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1464,488,519 - 64,521,292 (+)Ensembl
RefSeq Acc Id: XM_008977771   ⟹   XP_008976019
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11464,448,173 - 64,522,632 (+)NCBI
Mhudiblu_PPA_v01445,568,511 - 45,643,952 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014347593   ⟹   XP_014203079
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11464,451,546 - 64,522,632 (+)NCBI
Mhudiblu_PPA_v01445,572,505 - 45,643,952 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008976019 (Get FASTA)   NCBI Sequence Viewer  
  XP_014203079 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008976019   ⟸   XM_008977771
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_014203079   ⟸   XM_014347593
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000017253   ⟸   ENSPPAT00000039955
RefSeq Acc Id: ENSPPAP00000017251   ⟸   ENSPPAT00000039953
RefSeq Acc Id: ENSPPAP00000017244   ⟸   ENSPPAT00000039946


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031692 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000017244 UniProtKB/TrEMBL
  ENSPPAP00000017251 UniProtKB/TrEMBL
  ENSPPAP00000017253 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039946 UniProtKB/TrEMBL
  ENSPPAT00000039953 UniProtKB/TrEMBL
  ENSPPAT00000039955 UniProtKB/TrEMBL
InterPro FTB UniProtKB/TrEMBL
  PFTB_repeat UniProtKB/TrEMBL
  PGGT1B-like UniProtKB/TrEMBL
  Terpenoid_cyclase/PrenylTrfase UniProtKB/TrEMBL
KEGG Report pps:100991890 UniProtKB/TrEMBL
NCBI Gene FNTB ENTREZGENE
PANTHER PTHR11774 UniProtKB/TrEMBL
  PTHR11774:SF6 UniProtKB/TrEMBL
Pfam Prenyltrans UniProtKB/TrEMBL
Superfamily-SCOP SSF48239 UniProtKB/TrEMBL
UniProt A0A2R9AIQ1_PANPA UniProtKB/TrEMBL
  A0A2R9AJK4_PANPA UniProtKB/TrEMBL
  A0A2R9AQT6_PANPA UniProtKB/TrEMBL