SLC25A33 (solute carrier family 25 member 33) - Rat Genome Database

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Gene: SLC25A33 (solute carrier family 25 member 33) Pan paniscus
Analyze
Symbol: SLC25A33
Name: solute carrier family 25 member 33
RGD ID: 11820954
Description: ENCODES a protein that exhibits pyrimidine nucleotide transmembrane transporter activity (inferred); INVOLVED IN cellular response to insulin stimulus (inferred); cellular response to insulin-like growth factor stimulus (inferred); mitochondria-nucleus signaling pathway (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,645,042 - 218,687,967 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,289,679 - 217,332,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,300,384 - 8,343,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,493,787 - 9,574,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,541,918 - 9,574,549 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC25A33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,645,042 - 218,687,967 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,289,679 - 217,332,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,300,384 - 8,343,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,493,787 - 9,574,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,541,918 - 9,574,549 (+)Ensemblpanpan1.1panPan2
SLC25A33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,539,465 - 9,585,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,539,465 - 9,585,173 (+)EnsemblGRCh38hg38GRCh38
GRCh3719,599,524 - 9,645,231 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,522,115 - 9,565,418 (+)NCBINCBI36Build 36hg18NCBI36
Celera18,705,513 - 8,748,776 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef18,749,879 - 8,793,232 (+)NCBIHuRef
CHM1_119,588,092 - 9,631,383 (+)NCBICHM1_1
T2T-CHM13v2.019,075,801 - 9,121,512 (+)NCBIT2T-CHM13v2.0
Slc25a33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,828,493 - 149,858,746 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,828,493 - 149,858,734 (-)EnsemblGRCm39 Ensembl
GRCm384149,744,036 - 149,774,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,744,036 - 149,774,277 (-)EnsemblGRCm38mm10GRCm38
MGSCv374149,118,145 - 149,148,376 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,588,275 - 148,617,987 (-)NCBIMGSCv36mm8
Celera4152,010,383 - 152,042,111 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map480.15NCBI
Slc25a33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,478,070 - 165,518,186 (-)NCBIGRCr8
mRatBN7.25160,195,040 - 160,219,961 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,195,042 - 160,219,961 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,911,641 - 162,936,550 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,731,772 - 164,756,780 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,688,121 - 164,713,130 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,701,463 - 166,726,794 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,701,465 - 166,726,794 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,345,877 - 170,371,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,836,557 - 166,861,525 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5158,464,162 - 158,489,066 (-)NCBICelera
Cytogenetic Map5q36NCBI
Slc25a33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,905,001 - 3,921,505 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,905,001 - 3,921,501 (-)NCBIChiLan1.0ChiLan1.0
SLC25A33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1562,790,116 - 62,825,644 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl562,790,157 - 62,825,388 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha562,805,827 - 62,841,429 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,016,611 - 63,052,345 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,016,605 - 63,051,965 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,038,606 - 63,074,205 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0562,877,358 - 62,913,252 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,281,618 - 63,317,240 (+)NCBIUU_Cfam_GSD_1.0
Slc25a33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,096,589 - 33,118,280 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,585,253 - 3,604,310 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,585,372 - 3,603,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl669,934,834 - 69,969,084 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1669,934,810 - 69,969,091 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,148,523 - 64,168,519 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120122,187,366 - 122,220,903 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20122,187,637 - 122,220,661 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605426,153,642 - 26,197,329 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,835,649 - 2,868,692 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,838,700 - 2,868,672 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000037419   ⟹   ENSPPAP00000014732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl19,541,918 - 9,574,280 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000037422   ⟹   ENSPPAP00000014735
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl19,543,867 - 9,574,280 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000037428   ⟹   ENSPPAP00000014740
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl19,546,318 - 9,574,549 (+)Ensembl
RefSeq Acc Id: XM_034954819   ⟹   XP_034810710
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21218,645,042 - 218,687,967 (-)NCBI
NHGRI_mPanPan11217,289,679 - 217,332,623 (-)NCBI
Mhudiblu_PPA_v018,300,386 - 8,343,270 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034810710 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014732.1
  ENSPPAP00000014735.1
  ENSPPAP00000014740.1
RefSeq Acc Id: XP_034810710   ⟸   XM_034954819
- UniProtKB: A0A2R9ABU4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000014740   ⟸   ENSPPAT00000037428
Ensembl Acc Id: ENSPPAP00000014735   ⟸   ENSPPAT00000037422
Ensembl Acc Id: ENSPPAP00000014732   ⟸   ENSPPAT00000037419


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030519 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037419.1 UniProtKB/TrEMBL
  ENSPPAT00000037422.1 UniProtKB/TrEMBL
  ENSPPAT00000037428.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
  SLC25A33/36-like UniProtKB/TrEMBL
NCBI Gene SLC25A33 ENTREZGENE
PANTHER MITOCHONDRIAL CARRIER PROTEIN RIM2 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 33 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A2R9ABU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9ABU8_PANPA UniProtKB/TrEMBL
  A0A2R9AHL4_PANPA UniProtKB/TrEMBL