LOC100977490 (ras-related protein Rab-26) - Rat Genome Database

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Gene: LOC100977490 (ras-related protein Rab-26) Pan paniscus
Analyze
Symbol: LOC100977490
Name: ras-related protein Rab-26
RGD ID: 11819574
Description: ENCODES a protein that exhibits GMP binding (ortholog); INVOLVED IN exocrine system development (ortholog); Golgi to plasma membrane protein transport (ortholog); regulated exocytosis (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); endometrial carcinoma (ortholog); FOUND IN Golgi membrane (ortholog); plasma membrane (ortholog); secretory granule membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAB26; RAB26, member RAS oncogene family
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,651,129 - 2,656,678 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,250,286 - 2,254,513 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100977490
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,651,129 - 2,656,678 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,250,286 - 2,254,513 (+)NCBIpanpan1.1PanPan1.1panPan2
RAB26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,148,144 - 2,154,165 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,140,803 - 2,154,165 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,198,145 - 2,204,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,138,652 - 2,144,142 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,138,651 - 2,144,141NCBI
Celera162,413,043 - 2,418,558 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,124,981 - 2,130,406 (+)NCBIHuRef
CHM1_1162,198,600 - 2,204,114 (+)NCBICHM1_1
T2T-CHM13v2.0162,170,604 - 2,176,626 (+)NCBIT2T-CHM13v2.0
Rab26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,748,038 - 24,752,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,746,215 - 24,753,184 (-)EnsemblGRCm39 Ensembl
GRCm381724,529,054 - 24,533,747 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,527,241 - 24,534,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,665,999 - 24,670,692 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,256,654 - 24,261,489 (-)NCBIMGSCv36mm8
Celera1725,045,266 - 25,049,953 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.4NCBI
Rab26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,057,942 - 14,062,602 (-)NCBIGRCr8
mRatBN7.21013,553,395 - 13,558,063 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,553,395 - 13,558,030 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,299,890 - 18,304,657 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,788,735 - 17,793,502 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,287,922 - 13,292,689 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,894,271 - 13,898,578 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,893,290 - 13,898,855 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,711,256 - 13,715,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,780,502 - 13,784,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,780,501 - 13,783,719 (-)NCBI
Celera1013,233,628 - 13,237,935 (-)NCBICelera
Cytogenetic Map10q12NCBI
Rab26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,114,333 - 15,120,123 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,114,333 - 15,119,481 (-)NCBIChiLan1.0ChiLan1.0
RAB26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,806,750 - 38,812,541 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,807,487 - 38,812,379 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,045,910 - 40,051,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,115,273 - 39,120,961 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,115,276 - 39,121,022 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,800,104 - 38,805,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,772,414 - 38,778,087 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,251,172 - 39,256,854 (-)NCBIUU_Cfam_GSD_1.0
Rab26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,807,158 - 104,813,110 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,893,076 - 1,902,605 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,896,360 - 1,902,272 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,831,981 - 39,837,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,831,981 - 39,837,510 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,344,040 - 42,349,574 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,041,871 - 2,049,623 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,043,829 - 2,049,836 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,012,370 - 29,018,651 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913101,900 - 107,691 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913101,788 - 107,267 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034941031   ⟹   XP_034796922
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,651,136 - 2,656,678 (+)NCBI
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBI
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBI
RefSeq Acc Id: XM_034941032   ⟹   XP_034796923
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,651,131 - 2,656,678 (+)NCBI
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBI
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBI
RefSeq Acc Id: XM_034941033   ⟹   XP_034796924
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,651,134 - 2,656,678 (+)NCBI
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBI
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBI
RefSeq Acc Id: XM_034941034   ⟹   XP_034796925
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,651,129 - 2,656,678 (+)NCBI
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBI
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBI
RefSeq Acc Id: XM_034941035   ⟹   XP_034796926
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,651,135 - 2,656,678 (+)NCBI
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBI
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBI
RefSeq Acc Id: XM_034941036   ⟹   XP_034796927
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2182,651,131 - 2,656,678 (+)NCBI
NHGRI_mPanPan1166,432,500 - 6,438,014 (+)NCBI
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_034796922   ⟸   XM_034941031
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034796923   ⟸   XM_034941032
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034796926   ⟸   XM_034941035
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034796927   ⟸   XM_034941036
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034796924   ⟸   XM_034941033
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034796925   ⟸   XM_034941034
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042887 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063387.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene RAB26 ENTREZGENE
PANTHER PTHR47978 UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-26 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9CET1_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100977490  ras-related protein Rab-26  RAB26  RAB26, member RAS oncogene family  Symbol and/or name change 5135510 APPROVED