OXCT2 (3-oxoacid CoA-transferase 2) - Rat Genome Database

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Gene: OXCT2 (3-oxoacid CoA-transferase 2) Pan paniscus
Analyze
Symbol: OXCT2
Name: 3-oxoacid CoA-transferase 2
RGD ID: 11818985
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 3-oxoacid CoA transferase 2; BMP8B; bone morphogenetic protein 8b; LOC100985546; LOC100994494; succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,048,875 - 187,056,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,186,515 - 186,194,382 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,060,137 - 39,062,481 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1140,386,245 - 40,388,229 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OXCT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,048,875 - 187,056,744 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,186,515 - 186,194,382 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,060,137 - 39,062,481 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1140,386,245 - 40,388,229 (-)NCBIpanpan1.1PanPan1.1panPan2
OXCT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38139,769,523 - 39,771,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl139,769,523 - 39,771,348 (-)EnsemblGRCh38hg38GRCh38
GRCh37140,235,195 - 40,237,020 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,007,784 - 40,009,607 (-)NCBINCBI36Build 36hg18NCBI36
Build 34139,904,289 - 39,906,113NCBI
Celera138,262,370 - 38,264,174 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef138,353,912 - 38,355,735 (-)NCBIHuRef
CHM1_1140,350,670 - 40,352,493 (-)NCBICHM1_1
T2T-CHM13v2.0139,638,968 - 39,640,793 (-)NCBIT2T-CHM13v2.0
Oxct2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394123,010,041 - 123,011,793 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4123,010,059 - 123,011,793 (+)EnsemblGRCm39 Ensembl
GRCm384123,116,248 - 123,118,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,116,266 - 123,118,000 (+)EnsemblGRCm38mm10GRCm38
MGSCv374122,793,491 - 122,795,243 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364122,618,562 - 122,620,303 (+)NCBIMGSCv36mm8
Celera4121,447,028 - 121,448,914 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.38NCBI
Oxct2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85140,681,746 - 140,683,500 (+)NCBIGRCr8
mRatBN7.25135,396,632 - 135,398,386 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5138,103,358 - 138,105,112 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05139,873,329 - 139,875,083 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05139,880,456 - 139,882,210 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05140,813,957 - 140,815,711 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05144,806,548 - 144,808,302 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,432,259 - 142,434,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15142,437,484 - 142,439,238 (+)NCBI
Celera5133,935,353 - 133,937,107 (+)NCBICelera
Cytogenetic Map5q36NCBI
Oxct2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545217,267,971 - 17,270,072 (-)NCBIChiLan1.0ChiLan1.0
LOC102162296
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1695,350,075 - 95,351,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,436,052 - 88,437,898 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OXCT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,376,142 - 93,378,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603323,718,521 - 23,721,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oxct2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476422,250,482 - 22,252,045 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476422,250,206 - 22,252,144 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_055094954   ⟹   XP_054950929
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,048,875 - 187,056,744 (+)NCBI
NHGRI_mPanPan11186,186,515 - 186,194,382 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054950929 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_054950929   ⟸   XM_055094954


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000008285 ENTREZGENE
NCBI Gene LOC100994494 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 OXCT2  3-oxoacid CoA-transferase 2  LOC100994494  succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial  Symbol and/or name change 5135510 APPROVED
2018-05-08 LOC100994494  succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial  LOC100985546  succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial  Data merged from RGD:12018691 737654 PROVISIONAL