CCNA1 (cyclin A1) - Rat Genome Database

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Gene: CCNA1 (cyclin A1) Pan paniscus
Analyze
Symbol: CCNA1
Name: cyclin A1
RGD ID: 11816207
Description: PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); head and neck squamous cell carcinoma (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cyclin A1-CDK2 complex (inferred); microtubule cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclin-A1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11336,080,331 - 36,092,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,080,331 - 36,092,078 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01317,649,064 - 17,660,550 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CCNA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11336,080,331 - 36,092,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,080,331 - 36,092,078 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01317,649,064 - 17,660,550 (+)NCBIMhudiblu_PPA_v0panPan3
CCNA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1336,431,520 - 36,442,870 (+)EnsemblGRCh38hg38GRCh38
GRCh381336,430,488 - 36,442,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371337,006,092 - 37,017,007 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361335,904,633 - 35,915,008 (+)NCBINCBI36hg18NCBI36
Build 341335,904,632 - 35,915,008NCBI
Celera1318,073,175 - 18,084,229 (+)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1317,817,953 - 17,828,979 (+)NCBIHuRef
CHM1_11336,973,445 - 36,984,499 (+)NCBICHM1_1
Ccna1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,952,890 - 54,965,055 (-)NCBIGRCm39mm39
GRCm39 Ensembl354,952,890 - 54,962,922 (-)Ensembl
GRCm38355,045,469 - 55,057,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,045,469 - 55,055,501 (-)EnsemblGRCm38mm10GRCm38
MGSCv37354,849,391 - 54,858,977 (-)NCBIGRCm37mm9NCBIm37
MGSCv36355,133,404 - 55,142,984 (-)NCBImm8
Celera354,763,020 - 54,772,599 (-)NCBICelera
Cytogenetic Map3CNCBI
Ccna1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22139,231,738 - 139,278,066 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2139,201,074 - 139,243,157 (-)Ensembl
Rnor_6.02144,456,689 - 144,503,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2144,458,153 - 144,467,912 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02163,874,794 - 163,886,211 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,275,211 - 144,285,196 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12144,225,173 - 144,235,159 (-)NCBI
Celera2133,716,972 - 133,726,933 (-)NCBICelera
Cytogenetic Map2q26NCBI
Ccna1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,658,015 - 9,668,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,658,301 - 9,668,659 (-)NCBIChiLan1.0ChiLan1.0
CCNA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,189,457 - 4,198,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,189,457 - 4,198,373 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,219,718 - 4,228,956 (-)NCBI
ROS_Cfam_1.0254,288,085 - 4,297,327 (-)NCBI
ROS_Cfam_1.0 Ensembl254,281,774 - 4,296,521 (-)Ensembl
UMICH_Zoey_3.1254,195,452 - 4,204,690 (-)NCBI
UNSW_CanFamBas_1.0254,191,619 - 4,200,848 (-)NCBI
UU_Cfam_GSD_1.0254,255,371 - 4,264,612 (-)NCBI
Ccna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945165,363,959 - 165,379,007 (-)NCBI
SpeTri2.0NW_00493647230,574,957 - 30,586,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,396,301 - 12,405,353 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,396,149 - 12,405,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,355,480 - 12,364,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1314,979,775 - 14,992,609 (+)NCBIChlSab1.1chlSab2
ChlSab1.1314,979,775 - 14,992,609 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl314,982,392 - 14,993,562 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605729,300,504 - 29,312,984 (-)NCBIVero_WHO_p1.0
Ccna1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624776941,107 - 951,256 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000062935   ⟹   ENSPPAP00000040022
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1336,080,331 - 36,092,078 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000062944   ⟹   ENSPPAP00000040031
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1336,081,750 - 36,092,078 (+)Ensembl
RefSeq Acc Id: XM_003826885   ⟹   XP_003826933
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11336,081,750 - 36,092,078 (+)NCBI
Mhudiblu_PPA_v01317,650,037 - 17,660,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003826886   ⟹   XP_003826934
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11336,080,331 - 36,092,077 (+)NCBI
Mhudiblu_PPA_v01317,649,064 - 17,660,549 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008952249   ⟹   XP_008950497
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11336,081,750 - 36,092,077 (+)NCBI
Mhudiblu_PPA_v01317,650,037 - 17,660,549 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008952251   ⟹   XP_008950499
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11336,080,331 - 36,092,077 (+)NCBI
Mhudiblu_PPA_v01317,649,064 - 17,660,549 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008952252   ⟹   XP_008950500
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11336,081,770 - 36,092,077 (+)NCBI
Mhudiblu_PPA_v01317,650,175 - 17,660,549 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936584   ⟹   XP_034792475
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01317,649,555 - 17,660,549 (+)NCBI
RefSeq Acc Id: XM_034936585   ⟹   XP_034792476
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01317,649,555 - 17,660,549 (+)NCBI
RefSeq Acc Id: XM_034936586   ⟹   XP_034792477
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01317,650,189 - 17,660,549 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003826934   ⟸   XM_003826886
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008950499   ⟸   XM_008952251
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003826933   ⟸   XM_003826885
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008950497   ⟸   XM_008952249
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008950500   ⟸   XM_008952252
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034792476   ⟸   XM_034936585
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034792475   ⟸   XM_034936584
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034792477   ⟸   XM_034936586
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000040031   ⟸   ENSPPAT00000062944
RefSeq Acc Id: ENSPPAP00000040022   ⟸   ENSPPAT00000062935
Protein Domains
Cyclin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042674 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000040022 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000040031 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062935 UniProtKB/TrEMBL
  ENSPPAT00000062944 UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
KEGG Report pps:100983938 UniProtKB/TrEMBL
NCBI Gene CCNA1 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A2R9CDL2_PANPA UniProtKB/TrEMBL
  A0A2R9CNX9_PANPA UniProtKB/TrEMBL