OPN3 (opsin 3) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: OPN3 (opsin 3) Pan paniscus
Analyze
Symbol: OPN3
Name: opsin 3
RGD ID: 11814263
Description: ENCODES a protein that exhibits 11-cis retinal binding (ortholog); all-trans retinal binding (ortholog); INVOLVED IN cellular response to UV-A (ortholog); keratinocyte differentiation (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); fumarase deficiency (ortholog); Hereditary Leiomyomatosis and Renal Cell Cancer (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: opsin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11222,136,416 - 222,218,839 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1222,136,422 - 222,184,598 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01217,155,765 - 217,202,577 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
OPN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11222,136,416 - 222,218,839 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1222,136,422 - 222,184,598 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01217,155,765 - 217,202,577 (-)NCBIMhudiblu_PPA_v0panPan3
OPN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1241,590,102 - 241,677,376 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1241,628,851 - 241,640,369 (-)EnsemblGRCh38hg38GRCh38
GRCh381241,593,124 - 241,640,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371241,756,452 - 241,803,701 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361239,823,075 - 239,870,324 (-)NCBINCBI36hg18NCBI36
Build 341238,082,955 - 238,129,652NCBI
Celera1215,011,455 - 215,058,805 (-)NCBI
Cytogenetic Map1q43NCBI
HuRef1212,214,768 - 212,261,760 (-)NCBIHuRef
CHM1_11243,029,126 - 243,076,370 (-)NCBICHM1_1
Opn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,489,987 - 175,520,465 (-)NCBIGRCm39mm39
GRCm381175,662,421 - 175,692,901 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,662,421 - 175,692,776 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,592,558 - 177,622,721 (-)NCBIGRCm37mm9NCBIm37
MGSCv361177,499,102 - 177,529,265 (-)NCBImm8
Celera1182,748,089 - 182,778,248 (-)NCBICelera
Cytogenetic Map1H3NCBI
Opn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01393,716,481 - 93,746,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1393,716,481 - 93,746,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01398,180,840 - 98,211,263 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41391,396,311 - 91,427,005 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1387,187,867 - 87,218,156 (-)NCBICelera
Cytogenetic Map13q25NCBI
Opn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540610,450,768 - 10,493,958 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540610,450,810 - 10,493,958 (+)NCBIChiLan1.0ChiLan1.0
OPN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl732,996,938 - 33,040,876 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1732,995,047 - 33,040,873 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Opn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365268,833,495 - 8,876,631 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OPN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12578,671,900 - 78,720,697 (-)NCBI
ChlSab1.1 Ensembl2578,671,600 - 78,719,139 (-)Ensembl
Opn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477111,943,894 - 11,991,477 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000046340   ⟹   ENSPPAP00000023515
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1222,136,422 - 222,183,259 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046347   ⟹   ENSPPAP00000023522
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1222,137,653 - 222,184,598 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046351   ⟹   ENSPPAP00000023526
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1222,141,166 - 222,184,598 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046357   ⟹   ENSPPAP00000023532
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1222,178,703 - 222,183,175 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000046358   ⟹   ENSPPAP00000023533
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1222,179,008 - 222,183,175 (-)Ensembl
RefSeq Acc Id: XM_014343454   ⟹   XP_014198940
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11222,136,416 - 222,183,259 (-)NCBI
Mhudiblu_PPA_v01217,155,765 - 217,202,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034949809   ⟹   XP_034805700
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01217,191,061 - 217,202,577 (-)NCBI
Protein Sequences
Protein RefSeqs XP_014198940 (Get FASTA)   NCBI Sequence Viewer  
  XP_034805700 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_014198940   ⟸   XM_014343454
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034805700   ⟸   XM_034949809
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000023515   ⟸   ENSPPAT00000046340
RefSeq Acc Id: ENSPPAP00000023522   ⟸   ENSPPAT00000046347
RefSeq Acc Id: ENSPPAP00000023526   ⟸   ENSPPAT00000046351
RefSeq Acc Id: ENSPPAP00000023533   ⟸   ENSPPAT00000046358
RefSeq Acc Id: ENSPPAP00000023532   ⟸   ENSPPAT00000046357
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034935 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000023515 UniProtKB/TrEMBL
  ENSPPAP00000023522 UniProtKB/TrEMBL
  ENSPPAP00000023526 UniProtKB/TrEMBL
  ENSPPAP00000023532 UniProtKB/TrEMBL
  ENSPPAP00000023533 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046340 UniProtKB/TrEMBL
  ENSPPAT00000046347 UniProtKB/TrEMBL
  ENSPPAT00000046351 UniProtKB/TrEMBL
  ENSPPAT00000046357 UniProtKB/TrEMBL
  ENSPPAT00000046358 UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Retinal_BS UniProtKB/TrEMBL
NCBI Gene OPN3 ENTREZGENE
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
  OPSIN UniProtKB/TrEMBL
UniProt A0A2R9B1P5_PANPA UniProtKB/TrEMBL
  A0A2R9B1V9_PANPA UniProtKB/TrEMBL
  A0A2R9B5P8_PANPA UniProtKB/TrEMBL
  A0A2R9B8C6_PANPA UniProtKB/TrEMBL
  A0A2R9B8D7_PANPA UniProtKB/TrEMBL