CCDC169 (coiled-coil domain containing 169)

Gene: CCDC169 (coiled-coil domain containing 169) Pan paniscus

Analyze

Symbol:

CCDC169

Name:

coiled-coil domain containing 169

RGD ID:

11813625

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 169; SOHLH2; spermatogenesis and oogenesis specific basic helix-loop-helix 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	35,726,136 - 35,822,067 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	26,832,139 - 26,928,069 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	17,433,136 - 17,509,554 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	35,870,161 - 35,940,777 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	35,870,170 - 35,940,777 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

References

Genomics

Comparative Map Data

CCDC169
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	35,726,136 - 35,822,067 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	26,832,139 - 26,928,069 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	17,433,136 - 17,509,554 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	35,870,161 - 35,940,777 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	35,870,170 - 35,940,777 (-)	Ensembl	panpan1.1		panPan2

CCDC169
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	36,222,004 - 36,297,814 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	36,222,008 - 36,297,840 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	36,796,141 - 36,871,951 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	35,699,176 - 35,769,948 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	17,868,356 - 17,939,180 (-)	NCBI		Celera
Cytogenetic Map	13	q13.3	NCBI
HuRef	13	17,613,147 - 17,683,874 (-)	NCBI		HuRef
CHM1_1	13	36,768,752 - 36,839,475 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	35,441,522 - 35,517,321 (-)	NCBI		T2T-CHM13v2.0

Ccdc169
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	55,044,760 - 55,082,671 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	55,044,760 - 55,080,356 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	55,137,339 - 55,175,250 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	55,137,339 - 55,172,935 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	54,943,960 - 54,976,857 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	55,225,268 - 55,260,831 (+)	NCBI		MGSCv36	mm8
Celera	3	54,857,817 - 54,890,721 (+)	NCBI		Celera
Cytogenetic Map	3	C	NCBI
cM Map	3	26.53	NCBI

Ccdc169
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	141,471,762 - 141,501,325 (+)	NCBI		GRCr8
mRatBN7.2	2	139,321,644 - 139,351,161 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	139,321,670 - 139,351,161 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	145,896,509 - 145,926,017 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	144,007,946 - 144,037,450 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	138,640,379 - 138,669,883 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	144,551,382 - 144,581,044 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	144,551,390 - 144,581,044 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	163,967,594 - 163,996,902 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	144,364,672 - 144,394,530 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	133,805,483 - 133,835,099 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

Ccdc169
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	9,794,447 - 9,856,653 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	9,794,294 - 9,852,944 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC169
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	4,290,543 - 4,334,981 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	4,324,096 - 4,367,105 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	4,391,994 - 4,436,493 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	25	4,299,360 - 4,343,851 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	4,296,130 - 4,339,155 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	4,360,313 - 4,403,394 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc169
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	165,489,818 - 165,536,454 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	30,413,605 - 30,462,330 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	30,413,870 - 30,462,309 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC169
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	106,457,036 - 106,457,680 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	122,225,879 - 122,226,776 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC169
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	14,812,887 - 14,882,513 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666057	29,411,303 - 29,481,376 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc169
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	1,111,445 - 1,174,672 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	1,111,312 - 1,174,391 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008952245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008952246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034936578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034936579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034936580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057299657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004665862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_008954749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_608538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000034818 ⟹ ENSPPAP00000012156

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	13	35,870,170 - 35,940,777 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000034819 ⟹ ENSPPAP00000012157

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	13	35,874,191 - 35,940,641 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000034821 ⟹ ENSPPAP00000012159

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	13	35,926,297 - 35,940,641 (-)	Ensembl

RefSeq Acc Id:

XM_034936578 ⟹ XP_034792469

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	35,754,411 - 35,822,067 (-)	NCBI
NHGRI_mPanPan1	13	26,860,420 - 26,928,062 (-)	NCBI
Mhudiblu_PPA_v0	13	17,442,038 - 17,509,554 (-)	NCBI

RefSeq Acc Id:

XM_057299654 ⟹ XP_057155637

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	35,745,639 - 35,822,057 (-)	NCBI
NHGRI_mPanPan1	13	26,851,637 - 26,928,069 (-)	NCBI

RefSeq Acc Id:

XM_057299655 ⟹ XP_057155638

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	35,726,136 - 35,822,050 (-)	NCBI
NHGRI_mPanPan1	13	26,832,139 - 26,928,062 (-)	NCBI

RefSeq Acc Id:

XM_057299656 ⟹ XP_057155639

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	35,768,563 - 35,822,057 (-)	NCBI
NHGRI_mPanPan1	13	26,874,572 - 26,928,069 (-)	NCBI

RefSeq Acc Id:

XM_057299657 ⟹ XP_057155640

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	35,745,639 - 35,821,867 (-)	NCBI
NHGRI_mPanPan1	13	26,851,637 - 26,927,879 (-)	NCBI

RefSeq Acc Id:

XR_008954749

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	14	35,751,446 - 35,822,050 (-)	NCBI
NHGRI_mPanPan1	13	26,857,444 - 26,928,062 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_034792469	(Get FASTA)	NCBI Sequence Viewer
	XP_057155637	(Get FASTA)	NCBI Sequence Viewer
	XP_057155638	(Get FASTA)	NCBI Sequence Viewer
	XP_057155639	(Get FASTA)	NCBI Sequence Viewer
	XP_057155640	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000012156.1
	ENSPPAP00000012157.1
	ENSPPAP00000012159.1

RefSeq Acc Id:	XP_034792469 ⟸ XM_034936578
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9A4C7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000012159 ⟸ ENSPPAT00000034821

RefSeq Acc Id:

ENSPPAP00000012156 ⟸ ENSPPAT00000034818

RefSeq Acc Id:

ENSPPAP00000012157 ⟸ ENSPPAT00000034819

RefSeq Acc Id:	XP_057155638 ⟸ XM_057299655
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_057155637 ⟸ XM_057299654
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_057155640 ⟸ XM_057299657
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_057155639 ⟸ XM_057299656
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9A9Q1 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000029270	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000034818.1	UniProtKB/TrEMBL
	ENSPPAT00000034819.1	UniProtKB/TrEMBL
	ENSPPAT00000034821.1	UniProtKB/TrEMBL
InterPro	DUF4600	UniProtKB/TrEMBL
NCBI Gene	CCDC169	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 169	UniProtKB/TrEMBL
	PTHR28671	UniProtKB/TrEMBL
Pfam	DUF4600	UniProtKB/TrEMBL
UniProt	A0A2R9A4C7	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A5K2_PANPA	UniProtKB/TrEMBL
	A0A2R9A9Q1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar