CFAP52 (cilia and flagella associated protein 52) - Rat Genome Database

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Gene: CFAP52 (cilia and flagella associated protein 52) Pan paniscus
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Symbol: CFAP52
Name: cilia and flagella associated protein 52
RGD ID: 11810870
Description: INVOLVED IN establishment of left/right asymmetry (inferred); flagellated sperm motility (inferred); ASSOCIATED WITH genetic disease (ortholog); situs inversus (ortholog); Visceral Heterotaxy 10, Autosomal (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 52; WD repeat domain 16; WDR16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21964,107,600 - 64,169,961 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11768,917,243 - 68,979,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01742,013,575 - 42,075,940 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11746,756,168 - 46,816,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1746,756,168 - 46,816,033 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CFAP52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21964,107,600 - 64,169,961 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11768,917,243 - 68,979,767 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01742,013,575 - 42,075,940 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11746,756,168 - 46,816,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1746,756,168 - 46,816,033 (-)Ensemblpanpan1.1panPan2
CFAP52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,576,642 - 9,645,554 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,576,627 - 9,643,447 (+)EnsemblGRCh38hg38GRCh38
GRCh37179,479,959 - 9,546,764 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36179,420,669 - 9,487,501 (+)NCBINCBI36Build 36hg18NCBI36
Celera179,512,279 - 9,579,035 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef179,379,802 - 9,447,687 (+)NCBIHuRef
CHM1_1179,490,185 - 9,557,028 (+)NCBICHM1_1
T2T-CHM13v2.0179,484,338 - 9,553,284 (+)NCBIT2T-CHM13v2.0
Cfap52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,815,632 - 67,856,494 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,815,632 - 67,856,477 (-)EnsemblGRCm39 Ensembl
GRCm381167,924,806 - 67,965,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,924,806 - 67,965,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371167,738,308 - 67,779,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,741,007 - 67,781,837 (-)NCBIMGSCv36mm8
Celera1174,862,922 - 74,903,831 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.16NCBI
Cfap52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81053,112,692 - 53,153,844 (-)NCBIGRCr8
mRatBN7.21052,613,761 - 52,654,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1052,613,762 - 52,654,934 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1057,282,523 - 57,323,767 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01056,771,534 - 56,812,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01052,270,316 - 52,311,497 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01054,470,834 - 54,512,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1054,470,835 - 54,512,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01054,216,434 - 54,257,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,657,453 - 54,699,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11054,606,441 - 54,667,356 (-)NCBI
Celera1051,792,070 - 51,833,435 (-)NCBICelera
Cytogenetic Map10q24NCBI
Cfap52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,459,322 - 7,524,522 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554677,461,258 - 7,524,178 (-)NCBIChiLan1.0ChiLan1.0
CFAP52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,092,461 - 34,133,955 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,092,535 - 34,133,912 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha534,228,833 - 34,270,436 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0534,196,913 - 34,238,339 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl534,196,987 - 34,238,336 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1534,162,868 - 34,204,276 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0534,120,757 - 34,162,353 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0534,300,866 - 34,342,515 (+)NCBIUU_Cfam_GSD_1.0
Cfap52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560249,105,281 - 49,155,709 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365952,579,534 - 2,629,909 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365952,579,492 - 2,629,744 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,544,730 - 54,581,742 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,544,699 - 54,581,778 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,319,300 - 57,339,674 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1168,937,515 - 9,000,363 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl168,938,143 - 9,001,677 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605912,342,006 - 12,406,675 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478611,992,553 - 12,050,220 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478611,992,545 - 12,050,112 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000045918   ⟹   ENSPPAP00000023098
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1746,756,168 - 46,816,033 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045929   ⟹   ENSPPAP00000023109
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1746,756,429 - 46,815,970 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000045934   ⟹   ENSPPAP00000023114
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1746,756,429 - 46,815,970 (-)Ensembl
RefSeq Acc Id: XM_003818087   ⟹   XP_003818135
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21964,107,600 - 64,169,956 (-)NCBI
NHGRI_mPanPan11768,917,243 - 68,979,762 (-)NCBI
Mhudiblu_PPA_v01742,013,575 - 42,075,937 (-)NCBI
PanPan1.11746,756,168 - 46,816,033 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034942386   ⟹   XP_034798277
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21964,107,600 - 64,169,961 (-)NCBI
NHGRI_mPanPan11768,917,610 - 68,979,767 (-)NCBI
Mhudiblu_PPA_v01742,013,575 - 42,075,940 (-)NCBI
RefSeq Acc Id: XM_034942387   ⟹   XP_034798278
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21964,107,600 - 64,169,905 (-)NCBI
NHGRI_mPanPan11768,917,259 - 68,979,708 (-)NCBI
Mhudiblu_PPA_v01742,013,575 - 42,075,847 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003818135 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798277 (Get FASTA)   NCBI Sequence Viewer  
  XP_034798278 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000023098.1
  ENSPPAP00000023109.1
  ENSPPAP00000023114.1
RefSeq Acc Id: XP_003818135   ⟸   XM_003818087
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B4K1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034798277   ⟸   XM_034942386
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B4K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034798278   ⟸   XM_034942387
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B259 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000023098   ⟸   ENSPPAT00000045918
RefSeq Acc Id: ENSPPAP00000023109   ⟸   ENSPPAT00000045929
RefSeq Acc Id: ENSPPAP00000023114   ⟸   ENSPPAT00000045934


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034715 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045918.1 UniProtKB/TrEMBL
  ENSPPAT00000045929.1 UniProtKB/TrEMBL
  ENSPPAT00000045934.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Quino_amine_DH_bsu UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100983643 UniProtKB/TrEMBL
NCBI Gene CFAP52 ENTREZGENE
PANTHER PTHR13720:SF14 UniProtKB/TrEMBL
  WD-40 REPEAT PROTEIN UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50969 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A2R9B253_PANPA UniProtKB/TrEMBL
  A0A2R9B259 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B4K1 ENTREZGENE, UniProtKB/TrEMBL