MRPS6 (mitochondrial ribosomal protein S6) - Rat Genome Database

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Gene: MRPS6 (mitochondrial ribosomal protein S6) Pan paniscus
Analyze
Symbol: MRPS6
Name: mitochondrial ribosomal protein S6
RGD ID: 11808466
Description: ENCODES a protein that exhibits fucose transmembrane transporter activity (ortholog); glucose:sodium symporter activity (ortholog); myo-inositol:sodium symporter activity (ortholog); INVOLVED IN fucose transmembrane transport (ortholog); glucose transmembrane transport (ortholog); inositol metabolic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); coronary artery disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); voltage-gated potassium channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S6, mitochondrial; SLC5A3; small ribosomal subunit protein bS6m; sodium/myo-inositol cotransporter; solute carrier family 5 member 3
RGD Orthologs
Human
Mouse
Rat
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22230,191,861 - 30,261,300 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12125,050,026 - 25,119,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02120,441,365 - 20,510,800 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12133,809,456 - 33,879,670 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,862,033 - 33,879,670 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPS6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22230,191,861 - 30,261,300 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12125,050,026 - 25,119,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02120,441,365 - 20,510,800 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12133,809,456 - 33,879,670 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,862,033 - 33,879,670 (+)Ensemblpanpan1.1panPan2
MRPS6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382134,073,578 - 34,143,030 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2134,073,224 - 34,143,034 (+)EnsemblGRCh38hg38GRCh38
GRCh372135,445,878 - 35,515,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362134,367,693 - 34,437,200 (+)NCBINCBI36Build 36hg18NCBI36
Build 342134,367,692 - 34,437,198NCBI
Celera2120,645,386 - 20,714,895 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2120,976,108 - 20,993,807 (+)NCBIHuRef
CHM1_12135,008,095 - 35,077,595 (+)NCBICHM1_1
T2T-CHM13v2.02132,455,648 - 32,525,106 (+)NCBIT2T-CHM13v2.0
Slc5a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,855,210 - 91,884,361 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,855,210 - 91,884,361 (+)EnsemblGRCm39 Ensembl
GRCm381692,058,322 - 92,087,473 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1692,058,322 - 92,087,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371692,058,567 - 92,087,718 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,965,916 - 91,968,072 (+)NCBIMGSCv36mm8
Celera1693,161,374 - 93,172,132 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1653.44NCBI
Slc5a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,799,787 - 44,802,233 (+)NCBIGRCr8
mRatBN7.21131,313,847 - 31,316,293 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1131,295,476 - 31,318,883 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1140,008,115 - 40,010,560 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,679,563 - 32,682,008 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,843,057 - 31,845,503 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01132,229,366 - 32,231,812 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01135,834,279 - 35,836,725 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41132,063,275 - 32,065,721 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11132,119,576 - 32,121,733 (+)NCBI
Celera1130,970,690 - 30,973,136 (+)NCBICelera
Cytogenetic Map11q11NCBI
Slc5a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497129,152,449 - 29,183,192 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365008,284,631 - 8,296,387 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC5A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,711,679 - 197,718,695 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,688,632 - 197,723,323 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC5A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,104,938 - 58,131,225 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666071601,202 - 634,141 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc5a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474522,231,887 - 22,258,965 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474522,231,434 - 22,264,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034947894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000019435   ⟹   ENSPPAP00000004178
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2133,831,917 - 33,834,073 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000043354   ⟹   ENSPPAP00000020559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2133,862,033 - 33,879,670 (+)Ensembl
RefSeq Acc Id: XM_034947894   ⟹   XP_034803785
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22230,191,861 - 30,261,300 (+)NCBI
NHGRI_mPanPan12125,050,026 - 25,119,478 (+)NCBI
Mhudiblu_PPA_v02120,441,365 - 20,510,800 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034803785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020559.1
Reference Protein Sequences
RefSeq Acc Id: XP_034803785   ⟸   XM_034947894
- UniProtKB: A0A2R9AZN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000004178   ⟸   ENSPPAT00000019435
RefSeq Acc Id: ENSPPAP00000020559   ⟸   ENSPPAT00000043354


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000017773 Ensembl
  ENSPPAG00000033507 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043354.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.60 UniProtKB/TrEMBL
InterPro Ribosomal_S6 UniProtKB/TrEMBL
  Ribosomal_S6_sf UniProtKB/TrEMBL
  Transl_elong_EF1B/ribosomal_S6 UniProtKB/TrEMBL
NCBI Gene SLC5A3 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR21011 UniProtKB/TrEMBL
Pfam Ribosomal_S6 UniProtKB/TrEMBL
Superfamily-SCOP SSF54995 UniProtKB/TrEMBL
UniProt A0A2R9AZN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 MRPS6  mitochondrial ribosomal protein S6  SLC5A3  solute carrier family 5 member 3  Symbol and/or name change 5135510 APPROVED