LOC100993654 (pancreatic lipase-related protein 2) - Rat Genome Database

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Gene: LOC100993654 (pancreatic lipase-related protein 2) Pan paniscus
Analyze
Symbol: LOC100993654 (Ensembl: PNLIPRP2)
Name: pancreatic lipase-related protein 2 (Ensembl:pancreatic lipase related protein 2 (gene/pseudogene))
RGD ID: 11807278
Description: ENCODES a protein that exhibits acylglycerol lipase activity (ortholog); calcium ion binding (ortholog); galactolipase activity (ortholog); INVOLVED IN cellular defense response (ortholog); galactolipid catabolic process (ortholog); intestinal lipid catabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular space (ortholog); zymogen granule membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pancreatic lipase related protein 2; PNLIPRP2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,480,002 - 128,514,403 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,485,341 - 128,519,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,203,170 - 113,216,890 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,634,191 - 116,658,075 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,634,538 - 116,658,075 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100993654
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,480,002 - 128,514,403 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,485,341 - 128,519,742 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,203,170 - 113,216,890 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,634,191 - 116,658,075 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,634,538 - 116,658,075 (+)Ensemblpanpan1.1panPan2
PNLIPRP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,620,953 - 116,645,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,620,953 - 116,645,143 (+)EnsemblGRCh38hg38GRCh38
GRCh3710118,380,465 - 118,404,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,370,455 - 118,394,644 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410118,370,807 - 118,394,642NCBI
Celera10112,109,764 - 112,134,082 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10112,007,738 - 112,032,839 (+)NCBIHuRef
CHM1_110118,663,594 - 118,687,784 (+)NCBICHM1_1
T2T-CHM13v2.010117,515,050 - 117,539,456 (+)NCBIT2T-CHM13v2.0
Pnliprp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391958,748,155 - 58,765,966 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1958,748,151 - 58,765,966 (+)EnsemblGRCm39 Ensembl
GRCm381958,759,723 - 58,777,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1958,759,719 - 58,777,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv371958,834,213 - 58,852,024 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361958,812,979 - 58,830,778 (+)NCBIMGSCv36mm8
Celera1960,956,809 - 60,974,415 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1954.5NCBI
Pnliprp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,883,906 - 267,902,572 (+)NCBIGRCr8
mRatBN7.21257,897,766 - 257,916,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,897,766 - 257,916,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1266,101,911 - 266,120,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01272,807,924 - 272,826,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,450,439 - 265,469,037 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01279,896,973 - 279,927,600 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,896,973 - 279,927,600 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01287,257,993 - 287,290,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,267,609 - 265,285,920 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11265,478,653 - 265,496,965 (+)NCBI
Celera1253,553,443 - 253,571,751 (+)NCBICelera
Cytogenetic Map1q55NCBI
Pnliprp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,425,330 - 21,442,979 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543121,425,345 - 21,442,979 (+)NCBIChiLan1.0ChiLan1.0
PNLIPRP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,190,641 - 27,212,185 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,139,230 - 27,212,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,341,283 - 27,362,831 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02827,727,419 - 27,749,010 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,675,917 - 27,749,003 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,281,905 - 27,303,486 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,301,344 - 27,322,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,490,302 - 27,511,858 (+)NCBIUU_Cfam_GSD_1.0
PNLIPRP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14126,817,642 - 126,839,259 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114126,817,647 - 126,839,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214138,114,396 - 138,135,435 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103216568
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,428,235 - 109,453,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604870,683,089 - 70,708,007 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnliprp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473729,936,277 - 29,952,794 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473729,936,223 - 29,955,265 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000033948   ⟹   ENSPPAP00000011293
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl10116,634,538 - 116,658,075 (+)Ensembl
RefSeq Acc Id: XM_055093381   ⟹   XP_054949356
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28128,480,002 - 128,514,403 (+)NCBI
NHGRI_mPanPan110128,485,341 - 128,519,742 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054949356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011293.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000011293   ⟸   ENSPPAT00000033948
RefSeq Acc Id: XP_054949356   ⟸   XM_055093381
- UniProtKB: A0A2R9A219 (UniProtKB/TrEMBL)
Protein Domains
PLAT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028855 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033948.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
  PLAT/LH2 domain UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Lipase/vitellogenin UniProtKB/TrEMBL
  Lipase_LIPH UniProtKB/TrEMBL
  Lipase_N UniProtKB/TrEMBL
  Lipase_panc UniProtKB/TrEMBL
  PLAT/LH2_dom UniProtKB/TrEMBL
  PLAT/LH2_dom_sf UniProtKB/TrEMBL
  TAG_lipase UniProtKB/TrEMBL
NCBI Gene PNLIPRP2 ENTREZGENE
PANTHER PANCREATIC LIPASE-RELATED PROTEIN 2 UniProtKB/TrEMBL
  PTHR11610 UniProtKB/TrEMBL
Pfam Lipase UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
PIRSF Lipoprotein_lipase_LIPH UniProtKB/TrEMBL
PRINTS PANCLIPASE UniProtKB/TrEMBL
  TAGLIPASE UniProtKB/TrEMBL
PROSITE PLAT UniProtKB/TrEMBL
SMART LH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49723 UniProtKB/TrEMBL
  SSF53474 UniProtKB/TrEMBL
UniProt A0A2R9A219 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100993654  pancreatic lipase-related protein 2  PNLIPRP2  pancreatic lipase related protein 2  Symbol and/or name change 5135510 APPROVED