INTS1 (integrator complex subunit 1) - Rat Genome Database

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Gene: INTS1 (integrator complex subunit 1) Pan paniscus
Analyze
Symbol: INTS1
Name: integrator complex subunit 1
RGD ID: 11806506
Description: INVOLVED IN blastocyst growth (ortholog); inner cell mass cell proliferation (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Dandy-Walker syndrome (ortholog); genetic disease (ortholog); neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies (ortholog); FOUND IN integrator complex (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.171,838,001 - 1,871,974 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl71,838,302 - 1,871,554 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v071,719,254 - 1,753,150 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
INTS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.171,838,001 - 1,871,974 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl71,838,302 - 1,871,554 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v071,719,254 - 1,753,150 (-)NCBIMhudiblu_PPA_v0panPan3
INTS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3871,470,277 - 1,504,389 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl71,470,277 - 1,504,389 (-)EnsemblGRCh38hg38GRCh38
GRCh3771,509,913 - 1,544,025 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3671,476,439 - 1,513,199 (-)NCBINCBI36hg18NCBI36
Celera71,477,287 - 1,511,447 (-)NCBI
Cytogenetic Map7p22.3NCBI
HuRef71,430,650 - 1,464,808 (-)NCBIHuRef
CHM1_171,509,565 - 1,543,671 (-)NCBICHM1_1
CRA_TCAGchr7v271,562,263 - 1,596,426 (-)NCBI
Ints1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,737,037 - 139,761,455 (-)NCBIGRCm39mm39
GRCm39 Ensembl5139,737,037 - 139,761,429 (-)Ensembl
GRCm385139,751,282 - 139,775,702 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,751,282 - 139,775,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv375140,227,236 - 140,251,632 (-)NCBIGRCm37mm9NCBIm37
MGSCv365140,003,757 - 140,028,127 (-)NCBImm8
Celera5136,806,422 - 136,830,799 (-)NCBICelera
Cytogenetic Map5G2NCBI
Ints1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21214,861,312 - 14,886,048 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1214,861,318 - 14,886,037 (+)Ensembl
Rnor_6.01216,950,704 - 16,974,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,074,033 - 18,082,197 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01218,941,392 - 18,965,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01220,063,577 - 20,071,720 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,339,114 - 15,364,370 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11215,353,150 - 15,394,295 (+)NCBI
Celera1216,620,196 - 16,644,819 (+)NCBICelera
Cytogenetic Map12q11NCBI
Ints1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554609,116,891 - 9,143,120 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554609,116,650 - 9,149,470 (-)NCBIChiLan1.0ChiLan1.0
INTS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1615,453,491 - 15,483,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl615,447,391 - 15,483,239 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha616,921,168 - 16,950,886 (+)NCBI
ROS_Cfam_1.0615,579,451 - 15,609,172 (+)NCBI
ROS_Cfam_1.0 Ensembl615,579,248 - 15,609,165 (+)Ensembl
UMICH_Zoey_3.1615,382,213 - 15,411,928 (+)NCBI
UNSW_CanFamBas_1.0615,309,000 - 15,338,719 (+)NCBI
UU_Cfam_GSD_1.0615,596,044 - 15,625,763 (+)NCBI
Ints1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344143,383,776 - 143,412,780 (+)NCBI
SpeTri2.0NW_0049367541,597,574 - 1,626,578 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INTS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3979,404 - 1,005,566 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13979,403 - 1,005,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.231,094,038 - 1,120,192 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INTS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12820,098,155 - 20,132,683 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2820,098,586 - 20,132,859 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660901,581,188 - 1,618,582 (-)NCBIVero_WHO_p1.0
Ints1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474026,952,076 - 26,983,595 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000035801   ⟹   ENSPPAP00000013133
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl71,838,302 - 1,871,554 (-)Ensembl
RefSeq Acc Id: XM_034963497   ⟹   XP_034819388
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v071,719,254 - 1,753,124 (-)NCBI
RefSeq Acc Id: XM_034963498   ⟹   XP_034819389
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v071,719,254 - 1,753,150 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034819388 (Get FASTA)   NCBI Sequence Viewer  
  XP_034819389 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034819389   ⟸   XM_034963498
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034819388   ⟸   XM_034963497
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000013133   ⟸   ENSPPAT00000035801
Protein Domains
DUF3677


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029700 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000013133 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035801 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DUF3677 UniProtKB/TrEMBL
  INTS1 UniProtKB/TrEMBL
KEGG Report pps:100970904 UniProtKB/TrEMBL
NCBI Gene INTS1 ENTREZGENE
PANTHER PTHR21224 UniProtKB/TrEMBL
Pfam DUF3677 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A2R9A790_PANPA UniProtKB/TrEMBL