LOC100985913 (neuropeptide Y receptor type 4-2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100985913 (neuropeptide Y receptor type 4-2) Pan paniscus
Analyze
Symbol: LOC100985913
Name: neuropeptide Y receptor type 4-2
RGD ID: 11805910
Description: ENCODES a protein that exhibits pancreatic polypeptide receptor activity (ortholog); peptide binding (ortholog); peptide hormone binding (ortholog); INVOLVED IN neuropeptide signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN membrane (inferred); neuron projection (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuropeptide Y receptor type 4; neuropeptide Y receptor Y4; NPY4R; pancreatic polypeptide receptor 1; PPYR1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2859,498,601 - 59,505,133 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11059,503,918 - 59,510,353 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01043,769,740 - 43,776,225 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11046,822,670 - 46,827,451 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100985913
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2859,498,601 - 59,505,133 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11059,503,918 - 59,510,353 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01043,769,740 - 43,776,225 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11046,822,670 - 46,827,451 (+)NCBIpanpan1.1PanPan1.1panPan2
NPY4R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381046,461,099 - 46,470,668 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1046,461,099 - 46,465,958 (-)EnsemblGRCh38hg38GRCh38
GRCh371047,083,457 - 47,088,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361046,503,540 - 46,508,326 (+)NCBINCBI36Build 36hg18NCBI36
Build 341046,503,539 - 46,508,325NCBI
Cytogenetic Map10q11.22NCBI
CHM1_11047,901,251 - 47,906,033 (-)NCBICHM1_1
T2T-CHM13v2.01047,347,139 - 47,357,909 (-)NCBIT2T-CHM13v2.0
Npy4r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391433,867,603 - 33,874,376 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1433,865,949 - 33,874,446 (-)EnsemblGRCm39 Ensembl
GRCm381434,145,646 - 34,152,419 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,143,992 - 34,152,489 (-)EnsemblGRCm38mm10GRCm38
MGSCv371434,958,832 - 34,965,605 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361432,973,084 - 32,981,581 (-)NCBIMGSCv36mm8
Celera1430,407,960 - 30,414,733 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.8NCBI
Npy4r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,474,051 - 9,475,307 (-)NCBIGRCr8
mRatBN7.2169,467,801 - 9,469,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,467,801 - 9,469,057 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,481,156 - 9,482,412 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,625,865 - 10,627,121 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,476,211 - 9,477,467 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,489,450 - 10,490,706 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,489,450 - 10,490,706 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0168,808,683 - 8,809,939 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,787,170 - 9,788,426 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1169,787,167 - 9,788,424 (-)NCBI
Celera165,747,166 - 5,748,422 (+)NCBICelera
Cytogenetic Map16p15NCBI
Npy4r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555106,198,051 - 6,199,169 (+)NCBIChiLan1.0ChiLan1.0
NPY4R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,816,566 - 34,820,774 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,804,534 - 34,811,739 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0435,173,909 - 35,181,111 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl435,177,642 - 35,178,769 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0435,187,785 - 35,194,992 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,694,368 - 35,701,559 (+)NCBIUU_Cfam_GSD_1.0
NPY4R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11488,276,340 - 88,283,720 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,760,996 - 95,768,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034930439   ⟹   XP_034786330
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2859,498,601 - 59,504,889 (+)NCBI
NHGRI_mPanPan11059,503,918 - 59,510,206 (+)NCBI
Mhudiblu_PPA_v01043,769,740 - 43,776,225 (+)NCBI
RefSeq Acc Id: XM_057298868   ⟹   XP_057154851
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2859,500,177 - 59,505,133 (+)NCBI
NHGRI_mPanPan11059,505,494 - 59,510,353 (+)NCBI
RefSeq Acc Id: XM_057298869   ⟹   XP_057154852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2859,500,177 - 59,505,133 (+)NCBI
NHGRI_mPanPan11059,505,494 - 59,510,353 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034786330 (Get FASTA)   NCBI Sequence Viewer  
  XP_057154851 (Get FASTA)   NCBI Sequence Viewer  
  XP_057154852 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003439.1
Reference Protein Sequences
RefSeq Acc Id: XP_034786330   ⟸   XM_034930439
- UniProtKB: A0A2R8ZF13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057154851   ⟸   XM_057298868
- UniProtKB: A0A2R8ZF13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057154852   ⟸   XM_057298869
- UniProtKB: A0A2R8ZF13 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000014526 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000015892.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  NPY4_rcpt UniProtKB/TrEMBL
  NPY_rcpt UniProtKB/TrEMBL
KEGG Report pps:100985913 UniProtKB/TrEMBL
NCBI Gene NPY4R ENTREZGENE
PANTHER NEUROPEPTIDE Y RECEPTOR UniProtKB/TrEMBL
  PTHR24235:SF25 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  NRPEPTIDEY4R UniProtKB/TrEMBL
  NRPEPTIDEYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R8ZF13 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100985913  neuropeptide Y receptor type 4-2  NPY4R  neuropeptide Y receptor Y4  Symbol and/or name change 5135510 APPROVED