CLEC4G (C-type lectin domain family 4 member G) - Rat Genome Database

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Gene: CLEC4G (C-type lectin domain family 4 member G) Pan paniscus
Analyze
Symbol: CLEC4G
Name: C-type lectin domain family 4 member G
RGD ID: 11804928
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); carbohydrate derivative binding (inferred); fructose binding (inferred); INVOLVED IN alpha-beta T cell proliferation (ortholog); immature T cell proliferation in thymus (ortholog); negative regulation of alpha-beta T cell proliferation (ortholog); ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,397,121 - 12,401,902 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,514,375 - 11,518,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,015,848 - 7,019,396 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,870,550 - 7,873,699 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,870,730 - 7,873,631 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLEC4G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,397,121 - 12,401,902 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,514,375 - 11,518,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,015,848 - 7,019,396 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,870,550 - 7,873,699 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,870,730 - 7,873,631 (-)Ensemblpanpan1.1panPan2
CLEC4G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,728,957 - 7,732,110 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,728,957 - 7,733,906 (-)EnsemblGRCh38hg38GRCh38
GRCh37197,793,843 - 7,796,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,699,850 - 7,703,005 (-)NCBINCBI36Build 36hg18NCBI36
Build 34197,699,851 - 7,703,006NCBI
Celera197,664,968 - 7,668,182 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,463,587 - 7,466,801 (-)NCBIHuRef
CHM1_1197,793,562 - 7,796,776 (-)NCBICHM1_1
T2T-CHM13v2.0197,729,985 - 7,733,138 (-)NCBIT2T-CHM13v2.0
Clec4g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,757,066 - 3,770,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,757,064 - 3,770,651 (-)EnsemblGRCm39 Ensembl
GRCm3883,707,066 - 3,720,695 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,707,064 - 3,720,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,716,071 - 3,720,651 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,716,077 - 3,720,651 (-)NCBIMGSCv36mm8
Celera83,946,232 - 3,950,812 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Clec4g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,578,266 - 6,582,913 (-)NCBIGRCr8
mRatBN7.2121,780,370 - 1,785,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,780,371 - 1,784,985 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0122,273,649 - 2,278,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,273,941 - 2,277,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,434,464 - 4,439,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,412,875 - 2,416,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera123,635,478 - 3,641,645 (-)NCBICelera
Cytogenetic Map12p12NCBI
Clec4g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,571,288 - 1,575,979 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,571,374 - 1,574,901 (+)NCBIChiLan1.0ChiLan1.0
CLEC4G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,476,162 - 52,480,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,476,200 - 52,479,930 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,279,523 - 52,283,613 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,005,016 - 53,009,106 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,005,022 - 53,009,242 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,208,486 - 52,218,901 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02052,652,069 - 52,656,165 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,883,279 - 52,887,375 (-)NCBIUU_Cfam_GSD_1.0
Clec4g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,094,033 - 213,097,594 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,738,182 - 4,740,750 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,737,278 - 4,740,750 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC4G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,433,421 - 71,436,567 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,433,406 - 71,436,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,967,726 - 71,970,446 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233812
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,206,303 - 7,211,213 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,206,712 - 7,209,431 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666081636,814 - 640,084 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clec4g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624828773,569 - 778,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624828775,114 - 778,526 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000047141   ⟹   ENSPPAP00000024316
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl197,870,730 - 7,872,384 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000047145   ⟹   ENSPPAP00000024320
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl197,870,957 - 7,873,631 (-)Ensembl
RefSeq Acc Id: XM_034945722   ⟹   XP_034801613
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22012,397,121 - 12,401,902 (-)NCBI
NHGRI_mPanPan11911,514,375 - 11,518,900 (-)NCBI
Mhudiblu_PPA_v0197,015,848 - 7,019,396 (-)NCBI
RefSeq Acc Id: XM_034945723   ⟹   XP_034801614
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22012,397,121 - 12,401,901 (-)NCBI
NHGRI_mPanPan11911,514,375 - 11,518,899 (-)NCBI
Mhudiblu_PPA_v0197,015,848 - 7,019,396 (-)NCBI
RefSeq Acc Id: XM_055103204   ⟹   XP_054959179
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22012,397,121 - 12,400,020 (-)NCBI
NHGRI_mPanPan11911,514,375 - 11,517,274 (-)NCBI
RefSeq Acc Id: XM_063600109   ⟹   XP_063456179
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22012,397,122 - 12,401,897 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034801613 (Get FASTA)   NCBI Sequence Viewer  
  XP_034801614 (Get FASTA)   NCBI Sequence Viewer  
  XP_054959179 (Get FASTA)   NCBI Sequence Viewer  
  XP_063456179 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024316.1
  ENSPPAP00000024320.1
Reference Protein Sequences
RefSeq Acc Id: XP_034801614   ⟸   XM_034945723
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034801613   ⟸   XM_034945722
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000024316   ⟸   ENSPPAT00000047141
RefSeq Acc Id: ENSPPAP00000024320   ⟸   ENSPPAT00000047145
RefSeq Acc Id: XP_054959179   ⟸   XM_055103204
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063456179   ⟸   XM_063600109
- Peptide Label: isoform X4
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035302 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000047141.1 UniProtKB/TrEMBL
  ENSPPAT00000047145.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene CLEC4G ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER G UniProtKB/TrEMBL
  C-TYPE LECTIN SUPERFAMILY MEMBER UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A2R9B5K8_PANPA UniProtKB/TrEMBL
  A0A2R9B7W0_PANPA UniProtKB/TrEMBL