CD1D (CD1d molecule) - Rat Genome Database

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Gene: CD1D (CD1d molecule) Pan paniscus
Analyze
Symbol: CD1D
Name: CD1d molecule
RGD ID: 11803892
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); endogenous lipid antigen binding (ortholog); exogenous lipid antigen binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation, endogenous lipid antigen via MHC class Ib (ortholog); antigen processing and presentation, exogenous lipid antigen via MHC class Ib (ortholog); ASSOCIATED WITH Acute Hepatitis (ortholog); Arenaviridae infectious disease (ortholog); asthma (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); early endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: antigen-presenting glycoprotein CD1d
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11137,339,774 - 137,348,173 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,341,690 - 137,348,173 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01133,549,258 - 133,557,752 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CD1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11137,339,774 - 137,348,173 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,341,690 - 137,348,173 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01133,549,258 - 133,557,752 (+)NCBIMhudiblu_PPA_v0panPan3
CD1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1158,178,030 - 158,186,427 (+)EnsemblGRCh38hg38GRCh38
GRCh381158,178,030 - 158,186,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371158,147,820 - 158,156,217 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,416,361 - 156,422,841 (+)NCBINCBI36hg18NCBI36
Build 341154,962,809 - 154,967,758NCBI
Celera1131,220,809 - 131,227,289 (+)NCBI
Cytogenetic Map1q23.1NCBI
HuRef1129,508,011 - 129,514,491 (+)NCBIHuRef
CHM1_11159,546,145 - 159,552,625 (+)NCBICHM1_1
Cd1d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39386,903,141 - 86,919,665 (-)NCBIGRCm39mm39
GRCm39 Ensembl386,903,141 - 86,906,748 (-)Ensembl
GRCm38386,995,834 - 87,012,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl386,995,834 - 86,999,441 (-)EnsemblGRCm38mm10GRCm38
MGSCv37386,799,756 - 86,803,262 (-)NCBIGRCm37mm9NCBIm37
MGSCv36387,081,765 - 87,085,267 (-)NCBImm8
Celera387,021,305 - 87,024,811 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.91NCBI
Cd1d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22172,423,582 - 172,427,089 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2172,423,582 - 172,427,089 (-)Ensembl
Rnor_6.02186,330,298 - 186,333,805 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2186,330,298 - 186,333,805 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02205,728,725 - 205,732,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42179,011,165 - 179,014,672 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12178,961,270 - 178,964,778 (-)NCBI
Celera2166,382,474 - 166,385,981 (-)NCBICelera
Cytogenetic Map2q34NCBI
CD1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,489,169 - 23,491,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3823,516,058 - 23,520,487 (-)NCBI
ROS_Cfam_1.03823,658,417 - 23,662,742 (-)NCBI
UMICH_Zoey_3.13823,402,320 - 23,406,627 (-)NCBI
UNSW_CanFamBas_1.03823,956,328 - 23,960,599 (-)NCBI
UU_Cfam_GSD_1.03824,357,336 - 24,361,653 (-)NCBI
PCD1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1492,035,122 - 92,040,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24100,378,316 - 100,383,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1205,726,307 - 5,733,355 (-)NCBI
ChlSab1.1 Ensembl205,727,049 - 5,730,061 (-)Ensembl
Vero_WHO_p1.0NW_0236660384,918,748 - 4,925,895 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040231   ⟹   ENSPPAP00000017523
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1137,341,690 - 137,348,173 (+)Ensembl
RefSeq Acc Id: XM_008974483   ⟹   XP_008972731
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11137,339,774 - 137,346,641 (+)NCBI
Mhudiblu_PPA_v01133,549,258 - 133,556,217 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008974484   ⟹   XP_008972732
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11137,339,774 - 137,346,641 (+)NCBI
Mhudiblu_PPA_v01133,549,261 - 133,557,752 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034938100   ⟹   XP_034793991
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01133,549,262 - 133,556,217 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008972731 (Get FASTA)   NCBI Sequence Viewer  
  XP_008972732 (Get FASTA)   NCBI Sequence Viewer  
  XP_034793991 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008972731   ⟸   XM_008974483
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008972732   ⟸   XM_008974484
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034793991   ⟸   XM_034938100
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000017523   ⟸   ENSPPAT00000040231


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031860 Ensembl, ENTREZGENE
NCBI Gene CD1D ENTREZGENE