NUP37 (nucleoporin 37) - Rat Genome Database

Name: NUP37
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: NUP37 (nucleoporin 37) Pan paniscus

Analyze

Symbol:

NUP37

Name:

nucleoporin 37

RGD ID:

11801431

Description:

PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH genetic disease (ortholog); Primary Autosomal Recessive Microcephaly 24 (ortholog); FOUND IN kinetochore (inferred); nuclear envelope (inferred); nuclear pore outer ring (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nucleoporin Nup37

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUP37 (nucleoporin 37)	NCBI	Ortholog
Mus musculus (house mouse):	Nup37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nup37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nup37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUP37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nup37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUP37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUP37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nup37 (nucleoporin 37)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	110,147,644 - 110,193,514 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	110,144,042 - 110,189,897 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	99,661,779 - 99,707,618 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	103,059,232 - 103,105,066 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	103,059,232 - 103,105,066 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Primary Autosomal Recessive Microcephaly 24 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

kinetochore (IEA)

nuclear envelope (IEA)

nuclear pore outer ring (IEA)

nucleoplasm (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mRNA nuclear export pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

NUP37
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	110,147,644 - 110,193,514 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	110,144,042 - 110,189,897 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	99,661,779 - 99,707,618 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	103,059,232 - 103,105,066 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	103,059,232 - 103,105,066 (-)	Ensembl	panpan1.1		panPan2

NUP37
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	102,073,103 - 102,120,114 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	102,073,103 - 102,120,120 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	102,466,881 - 102,513,892 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	100,992,100 - 101,036,491 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	100,970,441 - 101,014,828	NCBI
Celera	12	102,131,991 - 102,176,381 (-)	NCBI		Celera
Cytogenetic Map	12	q23.2	NCBI
HuRef	12	99,527,621 - 99,571,949 (-)	NCBI		HuRef
CHM1_1	12	102,434,637 - 102,479,027 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	102,034,236 - 102,081,246 (-)	NCBI		T2T-CHM13v2.0

Nup37
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	87,982,838 - 88,014,257 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	87,982,854 - 88,014,252 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	88,146,976 - 88,178,395 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	88,146,992 - 88,178,390 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	87,609,737 - 87,641,140 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	87,576,847 - 87,608,193 (+)	NCBI		MGSCv36	mm8
Celera	10	90,124,078 - 90,155,478 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	43.7	NCBI

Nup37
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	24,443,998 - 24,497,088 (+)	NCBI		GRCr8
mRatBN7.2	7	22,556,544 - 22,609,622 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	22,573,764 - 22,609,616 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	24,568,406 - 24,596,610 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	26,731,115 - 26,759,319 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	26,508,146 - 26,536,350 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	28,715,299 - 28,750,978 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	28,701,690 - 28,743,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	28,825,280 - 28,860,960 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	24,847,159 - 24,875,363 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	24,869,532 - 24,895,483 (+)	NCBI
Celera	7	19,736,956 - 19,765,160 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

Nup37
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	37,258,294 - 37,297,762 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	37,215,324 - 37,297,762 (-)	NCBI	ChiLan1.0	ChiLan1.0

NUP37
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	40,930,321 - 40,972,092 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	40,930,281 - 40,972,239 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	41,298,255 - 41,340,080 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	41,584,584 - 41,626,416 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	41,584,592 - 41,626,560 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	40,845,180 - 40,893,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	40,947,557 - 40,989,563 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	41,222,195 - 41,264,018 (-)	NCBI		UU_Cfam_GSD_1.0

Nup37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	18,988,532 - 19,025,943 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	12,000,988 - 12,036,210 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	11,998,967 - 12,036,357 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUP37
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	82,091,517 - 82,145,528 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	82,091,439 - 82,144,463 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	86,067,263 - 86,118,880 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUP37
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	97,319,980 - 97,367,237 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	97,319,853 - 97,367,207 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	147,637,099 - 147,684,349 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nup37
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	6,163,380 - 6,203,522 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	6,163,379 - 6,202,782 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003832576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000032689 ⟹ ENSPPAP00000010042

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	12	103,059,232 - 103,105,066 (-)	Ensembl

RefSeq Acc Id:

XM_003832576 ⟹ XP_003832624

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	110,147,644 - 110,193,514 (-)	NCBI
NHGRI_mPanPan1	12	110,144,042 - 110,189,897 (-)	NCBI
Mhudiblu_PPA_v0	12	99,661,779 - 99,707,618 (-)	NCBI
PanPan1.1	12	103,059,232 - 103,105,066 (-)	NCBI

Sequence:

show sequence

CCGACCCGGAAGCAGAGCCACAGCGCGTCGCGGCAGCCCCCAAGGAAGACCAGCCTGCCTCTGG
TCGGTTCCCGGCGCTCTGCGTTTCGTGACCTTGTCCAGTAGAAGGCTATTTAATTTTCACAACT
GCTTGAATTTTGACATACAAGATGAAGCAAGATGCCTCAAGAAATGCTGCCTACACTGTGGATT
GTGAAGATTATGTGCATGTGGTAGAATTTAATCCCTTTGAGAATGGGGATTCAGGAAACCTAAT
TGCATATGGTGGCAATAATTATGTGGTCATTGGCACGTGTACGTTTCAGGAAGAAGAAGCAGAC
GTTGAAGGCATTCAGTATAAAACACTTCGAACATTTCACCATGGAGTCAGGGTTGATGGCATAG
CTTGGAGCCCAGAGACTAGACTTGATTCATTGCCTCCAGTAATCAAATTTTGTACTTCAGCTGC
TGATATGAAAATTAGATTATTTACTTCAGATCTTCAGGATAAAAATGAATATAAGGTTTTAGAG
GGCCATACCGATTTCATTAATGGTTTGGTGTTTGATCCCAAAGAAGGCCAAGAAATTGCAAGTG
TGAGTGACGATCACACCTGCAGGATTTGGAACTTGGAAGGAGTGCAGACAGCTCATTTTGTTCT
TCATTCTCCTGGCATGAGTGTGTGCTGGCATCCTGAGGAGACTTTTAAGCTAATGGTTGCAGAG
AAGAATGGAACAATCCGGTTTTATGATCTTTTGGCCCAACAGGCTATTTTATCTCTTGAATCAG
AACAAGTGCCACTAATGTCAGCACACTGGTGCTTAAAAAACACCTTCAAAGTTGGAGCCGTTGC
AGGAAATGATTGGTTAATTTGGGATATTACTCGGTCCAGTTATCCTCAAAATAAGAGACCTGTT
CACATGGATCGAGCCTGCTTATTCAGGTGGTCCACAGTTAGTGAAAATCTGTTTGCAACCACTG
GTTATCCTGGCAAAATGGCAAGCCAGTTTCAAATTCATCATTTAGGACACCCTCAGCCCATCCT
CATGGGTTCTGTAGCCGTTGGATCTGGACTGTCCTGGCATCGAACTCTCCCTCTGTGTGTAATT
GGAGGAGACCACAAGCTGTTGTTTTGGGTGACTGAAGTATAAAGTGTTTTCTGTACCTTAGATT
CACAAACTTTGTATTTTTAATACATATTTTGAAGAATTTCTATAGTACATATTTTGAAGAATTT
TTATATCAAATATACCGTATACTTTAGAAAATGTCTCAGTTGCTTTTATTAAATAAAATGTTGA
TGGTTTGAAAAATTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003832624	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000010042.1

RefSeq Acc Id:

XP_003832624 ⟸ XM_003832576

- UniProtKB:

A0A2R8ZYK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKQDASRNAAYTVDCEDYVHVVEFNPFENGDSGNLIAYGGNNYVVIGTCTFQEEEADVEGIQYK
TLRTFHHGVRVDGIAWSPETRLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHTDFIN
GLVFDPKEGQEIASVSDDHTCRIWNLEGVQTAHFVLHSPGMSVCWHPEETFKLMVAEKNGTIRF
YDLLAQQAILSLESEQVPLMSAHWCLKNTFKVGAVAGNDWLIWDITRSSYPQNKRPVHMDRACL
FRWSTVSENLFATTGYPGKMASQFQIHHLGHPQPILMGSVAVGSGLSWHRTLPLCVIGGDHKLL
FWVTEV

hide sequence

RefSeq Acc Id:

ENSPPAP00000010042 ⟸ ENSPPAT00000032689

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028253	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000032689.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	NUP37	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100984094	UniProtKB/TrEMBL
NCBI Gene	NUP37	ENTREZGENE
PANTHER	NUCLEOPORIN NUP37	UniProtKB/TrEMBL
	PTHR22806	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A2R8ZYK2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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