TRIM46 (tripartite motif containing 46) - Rat Genome Database

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Gene: TRIM46 (tripartite motif containing 46) Pan paniscus
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Symbol: TRIM46
Name: tripartite motif containing 46
RGD ID: 11800017
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN anterograde synaptic vesicle transport (ortholog); axonogenesis (ortholog); microtubule bundle formation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN axon cytoplasm (inferred); axon initial segment (inferred); cellular anatomical entity (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tripartite motif-containing protein 46
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11134,129,984 - 134,141,114 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,129,984 - 134,142,362 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01130,521,472 - 130,532,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TRIM46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11134,129,984 - 134,141,114 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1134,129,984 - 134,142,362 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01130,521,472 - 130,532,636 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TRIM46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,173,849 - 155,184,971 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1155,173,787 - 155,184,971 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,146,325 - 155,157,447 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,412,984 - 153,424,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 341151,959,432 - 151,970,518NCBI
Celera1128,217,624 - 128,228,710 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1126,508,655 - 126,520,717 (+)NCBIHuRef
CHM1_11156,542,118 - 156,553,302 (+)NCBICHM1_1
T2T-CHM13v2.01154,313,465 - 154,324,587 (+)NCBIT2T-CHM13v2.0
Trim46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,141,476 - 89,153,655 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,141,484 - 89,153,616 (-)EnsemblGRCm39 Ensembl
GRCm38389,234,169 - 89,246,358 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,234,177 - 89,246,309 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,038,099 - 89,049,819 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,320,104 - 89,331,824 (-)NCBIMGSCv36mm8
Celera389,268,050 - 89,279,844 (-)NCBICelera
Cytogenetic Map3F1NCBI
Trim46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22174,641,494 - 174,654,237 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,641,496 - 174,654,141 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02188,548,608 - 188,561,617 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,548,644 - 188,561,360 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,963,152 - 207,981,078 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,404,410 - 181,417,003 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,354,507 - 181,367,202 (-)NCBI
Celera2168,583,808 - 168,596,477 (-)NCBICelera
Cytogenetic Map2q34NCBI
Trim46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,646,244 - 1,656,825 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,646,244 - 1,656,825 (+)NCBIChiLan1.0ChiLan1.0
TRIM46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,345,506 - 42,354,667 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,345,523 - 42,354,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,836,083 - 41,845,231 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,214,710 - 42,223,858 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,214,717 - 42,223,845 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,994,528 - 42,003,676 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,048,391 - 42,057,538 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,332,013 - 42,341,161 (-)NCBIUU_Cfam_GSD_1.0
Trim46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,648,442 - 25,659,840 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365804,678,855 - 4,690,222 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,632,077 - 94,642,705 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,632,073 - 94,642,756 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,414,718 - 103,425,357 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,647,598 - 8,659,674 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,648,373 - 8,658,600 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660387,975,144 - 7,986,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,343,991 - 2,354,288 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,344,250 - 2,354,390 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000034228   ⟹   ENSPPAP00000011570
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,129,984 - 134,141,114 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034235   ⟹   ENSPPAP00000011577
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,129,992 - 134,141,114 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034248   ⟹   ENSPPAP00000011589
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,130,164 - 134,142,362 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034251   ⟹   ENSPPAP00000011592
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,130,164 - 134,138,386 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034252   ⟹   ENSPPAP00000011593
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,130,164 - 134,136,699 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034257   ⟹   ENSPPAP00000011598
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,130,164 - 134,136,002 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034261   ⟹   ENSPPAP00000011602
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,130,815 - 134,140,015 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000034263   ⟹   ENSPPAP00000011604
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1134,130,957 - 134,141,114 (+)Ensembl
RefSeq Acc Id: XM_003817063   ⟹   XP_003817111
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11134,129,984 - 134,141,114 (+)NCBI
Mhudiblu_PPA_v01130,521,539 - 130,532,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970238   ⟹   XP_008968486
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11134,129,992 - 134,141,114 (+)NCBI
Mhudiblu_PPA_v01130,521,608 - 130,532,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970240   ⟹   XP_008968488
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11134,130,957 - 134,141,114 (+)NCBI
Mhudiblu_PPA_v01130,522,445 - 130,532,636 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936822   ⟹   XP_034792713
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01130,521,472 - 130,532,636 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003817111 (Get FASTA)   NCBI Sequence Viewer  
  XP_008968486 (Get FASTA)   NCBI Sequence Viewer  
  XP_008968488 (Get FASTA)   NCBI Sequence Viewer  
  XP_034792713 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003817111   ⟸   XM_003817063
- Peptide Label: isoform X1
- UniProtKB: A0A2J8Q2W9 (UniProtKB/TrEMBL),   A0A2R9A7C6 (UniProtKB/TrEMBL),   A0A6D2VYI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008968486   ⟸   XM_008970238
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008968488   ⟸   XM_008970240
- Peptide Label: isoform X3
- UniProtKB: A0A2J8Q2Y2 (UniProtKB/TrEMBL),   A0A2R9A2Q7 (UniProtKB/TrEMBL),   A0A6D2X1X9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034792713   ⟸   XM_034936822
- Peptide Label: isoform X4
- UniProtKB: A0A2J8Q2Y1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000011577   ⟸   ENSPPAT00000034235
RefSeq Acc Id: ENSPPAP00000011570   ⟸   ENSPPAT00000034228
RefSeq Acc Id: ENSPPAP00000011604   ⟸   ENSPPAT00000034263
RefSeq Acc Id: ENSPPAP00000011602   ⟸   ENSPPAT00000034261
RefSeq Acc Id: ENSPPAP00000011598   ⟸   ENSPPAT00000034257
RefSeq Acc Id: ENSPPAP00000011592   ⟸   ENSPPAT00000034251
RefSeq Acc Id: ENSPPAP00000011593   ⟸   ENSPPAT00000034252
RefSeq Acc Id: ENSPPAP00000011589   ⟸   ENSPPAT00000034248
Protein Domains
B box-type   B30.2/SPRY   COS   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028986 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000011570 ENTREZGENE
  ENSPPAP00000011570.1 UniProtKB/TrEMBL
  ENSPPAP00000011577.1 UniProtKB/TrEMBL
  ENSPPAP00000011589.1 UniProtKB/TrEMBL
  ENSPPAP00000011592.1 UniProtKB/TrEMBL
  ENSPPAP00000011593.1 UniProtKB/TrEMBL
  ENSPPAP00000011598.1 UniProtKB/TrEMBL
  ENSPPAP00000011602.1 UniProtKB/TrEMBL
  ENSPPAP00000011604 ENTREZGENE
  ENSPPAP00000011604.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034228.1 UniProtKB/TrEMBL
  ENSPPAT00000034235.1 UniProtKB/TrEMBL
  ENSPPAT00000034248.1 UniProtKB/TrEMBL
  ENSPPAT00000034251.1 UniProtKB/TrEMBL
  ENSPPAT00000034252.1 UniProtKB/TrEMBL
  ENSPPAT00000034257.1 UniProtKB/TrEMBL
  ENSPPAT00000034261.1 UniProtKB/TrEMBL
  ENSPPAT00000034263.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  COS_domain UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Midline-1_COS UniProtKB/TrEMBL
  SPRY/PRY_TRIM46 UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report pps:100987001 UniProtKB/TrEMBL
NCBI Gene TRIM46 ENTREZGENE
Pfam COS UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  COS UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A2J8Q2W9 ENTREZGENE
  A0A2J8Q2Y1 ENTREZGENE
  A0A2J8Q2Y2 ENTREZGENE
  A0A2R9A2Q7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A2S4_PANPA UniProtKB/TrEMBL
  A0A2R9A2T2_PANPA UniProtKB/TrEMBL
  A0A2R9A2U3_PANPA UniProtKB/TrEMBL
  A0A2R9A2U9_PANPA UniProtKB/TrEMBL
  A0A2R9A3Y8_PANPA UniProtKB/TrEMBL
  A0A2R9A404_PANPA UniProtKB/TrEMBL
  A0A2R9A7C6 ENTREZGENE, UniProtKB/TrEMBL
  A0A6D2VYI5 ENTREZGENE
  A0A6D2X1X9 ENTREZGENE