CYP4F3 (cytochrome P450 family 4 subfamily F member 3) - Rat Genome Database

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Gene: CYP4F3 (cytochrome P450 family 4 subfamily F member 3) Pan paniscus
Analyze
Symbol: CYP4F3
Name: cytochrome P450 family 4 subfamily F member 3
RGD ID: 11798395
Description: ENCODES a protein that exhibits 20-aldehyde-leukotriene B4 20-monooxygenase activity (ortholog); 20-hydroxy-leukotriene B4 omega oxidase activity (ortholog); leukotriene-B4 20-monooxygenase activity (ortholog); INVOLVED IN fatty acid omega-oxidation (ortholog); leukotriene B4 catabolic process (ortholog); leukotriene B4 metabolic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Poisoning (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome P450 4F2; cytochrome P450 4F3; docosahexaenoic acid omega-hydroxylase CYP4F3; leukotriene-B(4) omega-hydroxylase 2; LOC100969141; phylloquinone omega-hydroxylase CYP4F2
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,545,248 - 20,566,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,548,098 - 19,568,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,162,886 - 15,182,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,146,664 - 16,165,869 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,146,664 - 16,165,869 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Poisoning  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CYP4F3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,545,248 - 20,566,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,548,098 - 19,568,193 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,162,886 - 15,182,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,146,664 - 16,165,869 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,146,664 - 16,165,869 (+)Ensemblpanpan1.1panPan2
CYP4F3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,640,897 - 15,662,825 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,640,897 - 15,662,825 (+)EnsemblGRCh38hg38GRCh38
GRCh371915,751,707 - 15,773,635 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,612,707 - 15,632,570 (+)NCBINCBI36Build 36hg18NCBI36
Build 341915,612,706 - 15,634,634NCBI
Celera1915,648,618 - 15,668,477 (+)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1915,320,174 - 15,340,137 (+)NCBIHuRef
CHM1_11915,751,200 - 15,771,063 (+)NCBICHM1_1
T2T-CHM13v2.01915,766,167 - 15,788,209 (+)NCBIT2T-CHM13v2.0
Cyp4f18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,742,326 - 72,763,512 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,742,326 - 72,763,470 (-)EnsemblGRCm39 Ensembl
GRCm38871,988,482 - 72,009,668 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,988,482 - 72,009,626 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,512,381 - 74,533,525 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,917,471 - 74,938,606 (-)NCBIMGSCv36mm8
Celera876,344,833 - 76,358,866 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.67NCBI
Cyp4f18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,797,558 - 17,838,958 (+)NCBIGRCr8
mRatBN7.21617,763,543 - 17,804,944 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,707,317 - 17,804,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,829,506 - 17,857,398 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,962,528 - 18,990,280 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,882,424 - 17,910,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,501,680 - 19,528,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,410,810 - 19,528,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,358,299 - 19,385,553 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,183,761 - 18,225,158 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,197,585 - 18,224,006 (+)NCBI
Celera1617,986,320 - 18,013,579 (+)NCBICelera
Cytogenetic Map16p14NCBI
LOC484867
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,611,799 - 46,664,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,458,620 - 46,705,789 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,491,933 - 46,513,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02047,130,943 - 47,152,195 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2047,098,253 - 47,151,792 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,365,840 - 46,387,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,784,998 - 46,803,798 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02047,058,563 - 47,076,586 (-)NCBIUU_Cfam_GSD_1.0
LOC110259329
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,864,575 - 61,984,903 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,863,378 - 61,884,717 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CYP4F3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,241,352 - 14,260,799 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,241,409 - 14,263,494 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,238,620 - 5,257,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Ensembl Acc Id: ENSPPAT00000052224   ⟹   ENSPPAP00000029375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1916,146,664 - 16,165,869 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052225   ⟹   ENSPPAP00000029376
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1916,146,665 - 16,165,869 (+)Ensembl
RefSeq Acc Id: XM_003813573   ⟹   XP_003813621
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22020,545,248 - 20,566,863 (+)NCBI
NHGRI_mPanPan11919,548,098 - 19,568,193 (+)NCBI
Mhudiblu_PPA_v01915,162,886 - 15,182,334 (+)NCBI
PanPan1.11916,146,665 - 16,165,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008966103   ⟹   XP_008964351
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22020,545,248 - 20,566,863 (+)NCBI
NHGRI_mPanPan11919,548,098 - 19,568,193 (+)NCBI
Mhudiblu_PPA_v01915,162,886 - 15,182,334 (+)NCBI
PanPan1.11916,146,664 - 16,165,869 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003813621 (Get FASTA)   NCBI Sequence Viewer  
  XP_008964351 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006914.1
  ENSPPAP00000029375
  ENSPPAP00000029375.1
  ENSPPAP00000029376
  ENSPPAP00000029376.1
RefSeq Acc Id: XP_008964351   ⟸   XM_008966103
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BI89 (UniProtKB/TrEMBL),   A0A2R8ZVJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003813621   ⟸   XM_003813573
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BS15 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000029376   ⟸   ENSPPAT00000052225
Ensembl Acc Id: ENSPPAP00000029375   ⟸   ENSPPAT00000052224


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025911 UniProtKB/TrEMBL
  ENSPPAG00000037690 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028766.1 UniProtKB/TrEMBL
  ENSPPAT00000052224.1 UniProtKB/TrEMBL
  ENSPPAT00000052225.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  Cytochrome_P450_Monoox UniProtKB/TrEMBL
KEGG Report pps:100969141 UniProtKB/TrEMBL
NCBI Gene LOC100969141 ENTREZGENE
PANTHER CYTOCHROME P450 4F2 UniProtKB/TrEMBL
  CYTOCHROME P450 4F3 UniProtKB/TrEMBL
  CYTOCHROME P450 FAMILY 4 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A2R8ZVJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BI89 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BS15 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83062 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-25 CYP4F3  cytochrome P450 family 4 subfamily F member 3  LOC100969141  docosahexaenoic acid omega-hydroxylase CYP4F3  Symbol and/or name change 5135510 APPROVED