PEX13 (peroxisomal biogenesis factor 13) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PEX13 (peroxisomal biogenesis factor 13) Pan paniscus
Analyze
Symbol: PEX13
Name: peroxisomal biogenesis factor 13
RGD ID: 11796888
Description: INVOLVED IN cerebral cortex cell migration (ortholog); fatty acid alpha-oxidation (ortholog); locomotory behavior (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); peroxisomal biogenesis disorder (ortholog); peroxisome biogenesis disorder 11A (ortholog); FOUND IN integral component of peroxisomal membrane (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: peroxisome biogenesis factor 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A62,250,887 - 62,285,163 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,250,887 - 62,285,151 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A61,108,970 - 61,143,615 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PEX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A62,250,887 - 62,285,163 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,250,887 - 62,285,151 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A61,108,970 - 61,143,615 (+)NCBIMhudiblu_PPA_v0panPan3
PEX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl261,017,225 - 61,051,990 (+)EnsemblGRCh38hg38GRCh38
GRCh38261,017,720 - 61,051,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37261,244,855 - 61,279,125 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,098,374 - 61,129,896 (+)NCBINCBI36hg18NCBI36
Build 34261,156,520 - 61,188,042NCBI
Celera261,088,403 - 61,122,717 (+)NCBI
Cytogenetic Map2p15NCBI
HuRef260,985,309 - 61,019,608 (+)NCBIHuRef
CHM1_1261,175,398 - 61,209,708 (+)NCBICHM1_1
Pex13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,597,283 - 23,615,883 (-)NCBIGRCm39mm39
GRCm39 Ensembl1123,596,479 - 23,615,959 (-)Ensembl
GRCm381123,646,843 - 23,665,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,646,479 - 23,665,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,546,479 - 23,565,935 (-)NCBIGRCm37mm9NCBIm37
MGSCv361123,546,479 - 23,565,935 (-)NCBImm8
Celera1125,768,364 - 25,787,821 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
Pex13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21497,602,829 - 97,621,233 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1497,603,539 - 97,621,262 (-)Ensembl
Rnor_6.014108,394,299 - 108,411,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,394,303 - 108,412,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,229,224 - 105,246,919 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,550,699 - 104,571,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114104,573,004 - 104,590,753 (-)NCBI
Celera1496,579,668 - 96,597,394 (-)NCBICelera
Cytogenetic Map14q22NCBI
Pex13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,799,568 - 22,830,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,799,568 - 22,830,718 (-)NCBIChiLan1.0ChiLan1.0
PEX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,113,213 - 61,130,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,123,655 - 61,193,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,993,422 - 61,021,277 (+)NCBI
ROS_Cfam_1.01062,112,178 - 62,140,036 (+)NCBI
UMICH_Zoey_3.11061,815,043 - 61,842,830 (+)NCBI
UNSW_CanFamBas_1.01062,099,662 - 62,127,580 (+)NCBI
UU_Cfam_GSD_1.01062,395,168 - 62,422,982 (+)NCBI
Pex13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,011,973 - 22,040,921 (-)NCBI
SpeTri2.0NW_0049364916,530,385 - 6,559,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,753,908 - 80,791,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,757,470 - 80,791,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,852,155 - 84,883,629 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEX13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,939,181 - 45,973,049 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,938,940 - 45,973,125 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604565,823,893 - 65,860,756 (+)NCBIVero_WHO_p1.0
Pex13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624833914,621 - 940,661 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000032583   ⟹   ENSPPAP00000009936
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A62,250,887 - 62,285,151 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000032591   ⟹   ENSPPAP00000009944
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A62,250,964 - 62,251,462 (+)Ensembl
RefSeq Acc Id: XM_003830866   ⟹   XP_003830914
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12A62,250,887 - 62,285,163 (+)NCBI
Mhudiblu_PPA_v02A61,108,970 - 61,143,615 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008956284   ⟹   XP_008954532
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.12A62,250,924 - 62,282,693 (+)NCBI
Mhudiblu_PPA_v02A61,109,076 - 61,140,878 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830914 (Get FASTA)   NCBI Sequence Viewer  
  XP_008954532 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003830914   ⟸   XM_003830866
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008954532   ⟸   XM_008956284
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000009944   ⟸   ENSPPAT00000032591
RefSeq Acc Id: ENSPPAP00000009936   ⟸   ENSPPAT00000032583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028208 Ensembl, ENTREZGENE
NCBI Gene PEX13 ENTREZGENE