KCTD1 (potassium channel tetramerization domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: KCTD1 (potassium channel tetramerization domain containing 1) Pan paniscus
Analyze
Symbol: KCTD1
Name: potassium channel tetramerization domain containing 1
RGD ID: 11795917
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); scalp-ear-nipple syndrome (ortholog); FOUND IN centriolar satellite (ortholog); cytosol (ortholog); intercellular bridge (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein KCTD1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21743,884,173 - 44,087,280 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11829,576,769 - 29,779,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01819,711,846 - 19,914,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11823,317,307 - 23,519,195 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21743,884,173 - 44,087,280 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11829,576,769 - 29,779,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01819,711,846 - 19,914,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11823,317,307 - 23,519,195 (-)NCBIpanpan1.1PanPan1.1panPan2
KCTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,454,910 - 26,657,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1826,454,910 - 26,657,401 (-)EnsemblGRCh38hg38GRCh38
GRCh371824,034,874 - 24,237,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361822,288,872 - 22,474,306 (-)NCBINCBI36Build 36hg18NCBI36
Celera1820,845,489 - 21,030,918 (-)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1820,884,642 - 21,087,047 (-)NCBIHuRef
CHM1_11823,962,322 - 24,164,829 (-)NCBICHM1_1
T2T-CHM13v2.01826,649,034 - 26,851,482 (-)NCBIT2T-CHM13v2.0
Kctd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391815,101,742 - 15,284,503 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1815,101,742 - 15,284,503 (-)EnsemblGRCm39 Ensembl
GRCm381814,968,685 - 15,151,446 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1814,968,685 - 15,151,446 (-)EnsemblGRCm38mm10GRCm38
MGSCv371815,127,194 - 15,309,955 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361815,111,587 - 15,294,464 (-)NCBIMGSCv36mm8
Celera1815,190,943 - 15,377,226 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map188.28NCBI
Kctd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,396,947 - 6,591,026 (-)NCBIGRCr8
mRatBN7.2186,122,390 - 6,316,434 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,347,923 - 6,443,402 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,135,540 - 7,231,031 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,406,120 - 6,501,549 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,374,778 - 6,474,990 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,336,572 - 6,433,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,225,049 - 6,324,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,225,886 - 6,230,085 (-)NCBI
Celera186,151,583 - 6,246,756 (-)NCBICelera
Cytogenetic Map18p13NCBI
Kctd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540214,474,259 - 14,670,329 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540214,478,702 - 14,573,154 (-)NCBIChiLan1.0ChiLan1.0
KCTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1762,119,658 - 62,214,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl762,118,600 - 62,213,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha761,464,661 - 61,648,487 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0762,079,891 - 62,263,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl762,169,268 - 62,263,633 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1761,752,645 - 61,936,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0761,854,535 - 61,949,020 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0762,067,915 - 62,251,809 (+)NCBIUU_Cfam_GSD_1.0
Kctd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,045,310 - 58,233,851 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365505,581,982 - 5,771,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6111,048,202 - 111,148,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16111,048,193 - 111,237,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26104,006,793 - 104,192,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11853,933,015 - 54,132,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1854,039,500 - 54,133,549 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605028,660,787 - 28,863,284 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247705,775,458 - 5,968,699 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247705,775,317 - 5,967,929 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008955728   ⟹   XP_008953976
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21743,884,173 - 44,087,280 (-)NCBI
NHGRI_mPanPan11829,576,769 - 29,779,878 (-)NCBI
Mhudiblu_PPA_v01819,711,910 - 19,914,897 (-)NCBI
PanPan1.11823,317,307 - 23,519,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034943747   ⟹   XP_034799638
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21743,884,173 - 43,978,191 (-)NCBI
NHGRI_mPanPan11829,576,769 - 29,670,776 (-)NCBI
Mhudiblu_PPA_v01819,711,846 - 19,805,859 (-)NCBI
RefSeq Acc Id: XM_034943749   ⟹   XP_034799640
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21743,884,173 - 43,978,379 (-)NCBI
NHGRI_mPanPan11829,576,769 - 29,670,967 (-)NCBI
Mhudiblu_PPA_v01819,711,910 - 19,806,430 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008953976 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799638 (Get FASTA)   NCBI Sequence Viewer  
  XP_034799640 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027361.1
  ENSPPAP00000027366
  ENSPPAP00000027366.1
Reference Protein Sequences
RefSeq Acc Id: XP_008953976   ⟸   XM_008955728
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BGG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034799638   ⟸   XM_034943747
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034799640   ⟸   XM_034943749
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BGG6 (UniProtKB/TrEMBL)
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036748 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050201.1 UniProtKB/TrEMBL
  ENSPPAT00000050206.1 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  BTB_POZ_KCTD1 UniProtKB/TrEMBL
  KCTD1-15-like_C UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
NCBI Gene KCTD1 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD1 UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  KCTD1-15_CTD UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A2R9BGF9_PANPA UniProtKB/TrEMBL
  A0A2R9BGG6 ENTREZGENE, UniProtKB/TrEMBL