ZCCHC7 (zinc finger CCHC-type containing 7) - Rat Genome Database

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Gene: ZCCHC7 (zinc finger CCHC-type containing 7) Pan paniscus
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Symbol: ZCCHC7
Name: zinc finger CCHC-type containing 7
RGD ID: 11795505
Description: ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCHC domain-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,236,544 - 87,474,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1987,243,228 - 87,481,144 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0936,962,689 - 37,201,092 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1937,888,350 - 38,126,234 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleolus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZCCHC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,236,544 - 87,474,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1987,243,228 - 87,481,144 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0936,962,689 - 37,201,092 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1937,888,350 - 38,126,234 (+)NCBIpanpan1.1PanPan1.1panPan2
ZCCHC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,120,167 - 37,358,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,120,574 - 37,358,149 (+)EnsemblGRCh38hg38GRCh38
GRCh37937,120,469 - 37,358,146 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,110,469 - 37,348,146 (+)NCBINCBI36Build 36hg18NCBI36
Build 34937,110,632 - 37,348,143NCBI
Celera937,053,823 - 37,291,368 (+)NCBICelera
Cytogenetic Map9p13.2NCBI
HuRef937,071,313 - 37,309,243 (+)NCBIHuRef
CHM1_1937,121,671 - 37,359,439 (+)NCBICHM1_1
T2T-CHM13v2.0937,143,909 - 37,381,876 (+)NCBIT2T-CHM13v2.0
Zcchc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39444,756,556 - 44,932,215 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl444,755,877 - 44,932,215 (+)EnsemblGRCm39 Ensembl
GRCm38444,756,558 - 44,932,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl444,755,877 - 44,932,215 (+)EnsemblGRCm38mm10GRCm38
MGSCv37444,769,440 - 44,945,083 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36444,777,668 - 44,933,159 (+)NCBIMGSCv36mm8
Celera444,776,366 - 44,951,978 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.57NCBI
Zcchc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8563,787,292 - 63,968,960 (+)NCBIGRCr8
mRatBN7.2558,992,558 - 59,173,308 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl558,993,290 - 59,173,300 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx560,971,385 - 61,150,595 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0562,790,906 - 62,970,106 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0562,760,133 - 62,939,347 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,250,546 - 60,430,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,250,546 - 60,429,708 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0564,759,112 - 64,938,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,263,753 - 61,478,276 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1561,387,798 - 61,478,845 (+)NCBI
Celera557,566,173 - 57,745,122 (+)NCBICelera
Cytogenetic Map5q22NCBI
Zcchc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541929,108,644 - 29,334,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541929,108,905 - 29,339,602 (-)NCBIChiLan1.0ChiLan1.0
ZCCHC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11153,434,007 - 53,686,187 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1153,438,985 - 53,685,855 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1152,024,633 - 52,276,570 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01154,543,142 - 54,795,717 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1154,543,194 - 54,796,687 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11153,042,669 - 53,294,223 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,071,209 - 53,323,143 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01153,767,628 - 54,019,863 (+)NCBIUU_Cfam_GSD_1.0
Zcchc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947168,380,441 - 168,606,645 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365244,927,836 - 5,168,337 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365244,927,956 - 5,154,225 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1237,820,363 - 238,068,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11237,820,675 - 238,068,505 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21265,773,621 - 266,019,861 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11243,234,800 - 43,484,893 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1243,234,590 - 43,463,364 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603840,303,291 - 40,603,463 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624930731,051 - 966,675 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624930725,808 - 968,072 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_003805126   ⟹   XP_003805174
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,879 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,833 (-)NCBI
Mhudiblu_PPA_v0936,962,721 - 37,201,092 (+)NCBI
PanPan1.1937,888,350 - 38,126,234 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003805127   ⟹   XP_003805175
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,758 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,699 (-)NCBI
Mhudiblu_PPA_v0936,962,834 - 37,201,092 (+)NCBI
PanPan1.1937,888,401 - 38,126,234 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008967861   ⟹   XP_008966109
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,879 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,833 (-)NCBI
Mhudiblu_PPA_v0936,962,708 - 37,201,092 (+)NCBI
PanPan1.1937,888,350 - 38,126,234 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008967867   ⟹   XP_008966115
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,421 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,664 (-)NCBI
Mhudiblu_PPA_v0936,963,166 - 37,201,092 (+)NCBI
PanPan1.1937,888,678 - 38,126,234 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034967438   ⟹   XP_034823329
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,758 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,699 (-)NCBI
Mhudiblu_PPA_v0936,962,834 - 37,201,092 (+)NCBI
RefSeq Acc Id: XM_034967439   ⟹   XP_034823330
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,873 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,814 (-)NCBI
Mhudiblu_PPA_v0936,962,689 - 37,201,092 (+)NCBI
RefSeq Acc Id: XM_055092034   ⟹   XP_054948009
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,756 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,697 (-)NCBI
RefSeq Acc Id: XM_055092035   ⟹   XP_054948010
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,719 (-)NCBI
NHGRI_mPanPan1987,243,228 - 87,480,660 (-)NCBI
RefSeq Acc Id: XM_063594387   ⟹   XP_063450457
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,827 (-)NCBI
RefSeq Acc Id: XM_063594388   ⟹   XP_063450458
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,835 (-)NCBI
RefSeq Acc Id: XM_063594389   ⟹   XP_063450459
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21187,236,544 - 87,474,422 (-)NCBI
RefSeq Acc Id: XP_008966109   ⟸   XM_008967861
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003805174   ⟸   XM_003805126
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003805175   ⟸   XM_003805127
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008966115   ⟸   XM_008967867
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034823330   ⟸   XM_034967439
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034823329   ⟸   XM_034967438
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054948009   ⟸   XM_055092034
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054948010   ⟸   XM_055092035
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063450458   ⟸   XM_063594388
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063450457   ⟸   XM_063594387
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063450459   ⟸   XM_063594389
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene ZCCHC7 ENTREZGENE