SFPQ (splicing factor proline and glutamine rich) - Rat Genome Database

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Gene: SFPQ (splicing factor proline and glutamine rich) Pan paniscus
Analyze
Symbol: SFPQ
Name: splicing factor proline and glutamine rich
RGD ID: 11795179
Description: ENCODES a protein that exhibits chromatin binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); chromosome organization (ortholog); dendritic transport of messenger ribonucleoprotein complex (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN dendrite (ortholog); dendrite cytoplasm (ortholog); RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC106634609; splicing factor, proline- and glutamine-rich; uncharacterized LOC106634609
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,650,480 - 191,668,748 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,772,773 - 190,789,937 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,444,105 - 34,461,012 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1135,624,862 - 35,641,551 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl135,632,917 - 35,641,551 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SFPQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,650,480 - 191,668,748 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,772,773 - 190,789,937 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,444,105 - 34,461,012 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1135,624,862 - 35,641,551 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl135,632,917 - 35,641,551 (-)Ensemblpanpan1.1panPan2
SFPQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38135,176,380 - 35,193,145 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl135,176,378 - 35,193,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37135,641,981 - 35,658,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36135,421,788 - 35,431,322 (-)NCBINCBI36Build 36hg18NCBI36
Build 34135,318,295 - 35,327,828NCBI
Celera133,923,595 - 33,933,137 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef133,767,918 - 33,777,460 (-)NCBIHuRef
CHM1_1135,764,572 - 35,774,114 (-)NCBICHM1_1
T2T-CHM13v2.0135,039,049 - 35,055,814 (-)NCBIT2T-CHM13v2.0
Sfpq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,914,504 - 126,944,894 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,915,117 - 126,930,806 (+)EnsemblGRCm39 Ensembl
GRCm384127,020,716 - 127,051,101 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4127,021,324 - 127,037,013 (+)EnsemblGRCm38mm10GRCm38
MGSCv374126,698,545 - 126,708,480 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364126,523,639 - 126,533,100 (+)NCBIMGSCv36mm8
Celera4125,355,661 - 125,365,521 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map461.2NCBI
Sfpq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,621,678 - 144,637,930 (+)NCBIGRCr8
mRatBN7.25139,338,034 - 139,353,476 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5139,338,075 - 139,353,472 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5142,034,218 - 142,042,921 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,804,194 - 143,812,897 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,804,996 - 143,813,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05145,079,803 - 145,088,517 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5145,079,803 - 145,088,498 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05148,849,944 - 148,858,919 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45146,460,306 - 146,469,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15146,474,790 - 146,479,335 (+)NCBI
Celera5137,833,201 - 137,841,438 (+)NCBICelera
Cytogenetic Map5q36NCBI
Sfpq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545213,267,968 - 13,283,823 (-)NCBIChiLan1.0ChiLan1.0
SFPQ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,879,955 - 6,896,309 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,880,065 - 6,888,004 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,118,958 - 7,136,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,025,344 - 7,041,598 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1156,889,739 - 6,905,994 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,935,356 - 6,952,770 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,949,114 - 6,966,519 (+)NCBIUU_Cfam_GSD_1.0
Sfpq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505851,951,708 - 51,967,202 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647417,776,490 - 17,791,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SFPQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,391,555 - 91,408,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1691,391,552 - 91,408,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SFPQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12097,698,953 - 97,715,762 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2097,698,411 - 97,711,294 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603319,006,801 - 19,023,608 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sfpq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476418,228,365 - 18,240,340 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476418,223,845 - 18,239,748 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036539   ⟹   ENSPPAP00000013864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl135,632,917 - 35,641,551 (-)Ensembl
RefSeq Acc Id: XM_034961019   ⟹   XP_034816910
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21191,650,480 - 191,668,748 (+)NCBI
NHGRI_mPanPan11190,772,774 - 190,782,726 (+)NCBI
Mhudiblu_PPA_v0134,444,107 - 34,461,011 (-)NCBI
RefSeq Acc Id: XM_063608883   ⟹   XP_063464953
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21191,650,480 - 191,668,748 (+)NCBI
RefSeq Acc Id: XM_063608884   ⟹   XP_063464954
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21191,650,480 - 191,668,748 (+)NCBI
RefSeq Acc Id: XM_063608885   ⟹   XP_063464955
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21191,650,480 - 191,668,748 (+)NCBI
RefSeq Acc Id: XM_063608886   ⟹   XP_063464956
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21191,651,975 - 191,668,748 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034816910 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464953 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464954 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464955 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464956 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013864.1
Reference Protein Sequences
RefSeq Acc Id: XP_034816910   ⟸   XM_034961019
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A9B3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000013864   ⟸   ENSPPAT00000036539
RefSeq Acc Id: XP_063464953   ⟸   XM_063608883
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063464954   ⟸   XM_063608884
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063464955   ⟸   XM_063608885
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063464956   ⟸   XM_063608886
- Peptide Label: isoform X2
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030078 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036539.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  6.10.250.1170 UniProtKB/TrEMBL
InterPro NOPS UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PSF_NOPS UniProtKB/TrEMBL
  PSF_RRM1 UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene SFPQ ENTREZGENE
PANTHER RNA RECOGNITION MOTIF-CONTAINING UniProtKB/TrEMBL
  SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH UniProtKB/TrEMBL
Pfam NOPS UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R9A9B3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 SFPQ  splicing factor proline and glutamine rich  LOC106634609  uncharacterized LOC106634609  Data merged from RGD:11879573 737654 PROVISIONAL