CNEP1R1 (CTD nuclear envelope phosphatase 1 regulatory subunit 1) - Rat Genome Database

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Gene: CNEP1R1 (CTD nuclear envelope phosphatase 1 regulatory subunit 1) Pan paniscus
Analyze
Symbol: CNEP1R1
Name: CTD nuclear envelope phosphatase 1 regulatory subunit 1
RGD ID: 11794435
Description: INVOLVED IN positive regulation of protein dephosphorylation (inferred); positive regulation of triglyceride biosynthetic process (inferred); protein localization to nucleus (inferred); ASSOCIATED WITH genetic disease (ortholog); nephronophthisis 14 (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear envelope phosphatase-regulatory subunit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21859,482,615 - 59,494,520 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11665,387,660 - 65,399,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01630,288,552 - 30,300,444 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11649,172,711 - 49,184,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,172,711 - 49,184,592 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CNEP1R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21859,482,615 - 59,494,520 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11665,387,660 - 65,399,570 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01630,288,552 - 30,300,444 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11649,172,711 - 49,184,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,172,711 - 49,184,592 (+)Ensemblpanpan1.1panPan2
CNEP1R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381650,025,225 - 50,037,081 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1650,024,410 - 50,037,088 (+)EnsemblGRCh38hg38GRCh38
GRCh371650,059,136 - 50,070,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361648,616,690 - 48,628,500 (+)NCBINCBI36Build 36hg18NCBI36
Celera1634,572,289 - 34,584,088 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1635,946,539 - 35,958,328 (+)NCBIHuRef
CHM1_11651,466,454 - 51,478,264 (+)NCBICHM1_1
T2T-CHM13v2.01655,822,970 - 55,834,826 (+)NCBIT2T-CHM13v2.0
Cnep1r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,845,344 - 88,861,825 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl888,845,397 - 88,861,738 (+)EnsemblGRCm39 Ensembl
GRCm38888,118,716 - 88,135,197 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,118,769 - 88,135,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37890,642,658 - 90,659,096 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36891,008,905 - 91,024,585 (+)NCBIMGSCv36mm8
Celera892,390,385 - 92,406,789 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map843.06NCBI
Cnep1r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81935,106,802 - 35,121,101 (-)NCBIGRCr8
mRatBN7.21918,932,631 - 18,947,667 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1918,932,682 - 18,947,667 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1920,612,912 - 20,627,209 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01925,807,543 - 25,821,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01928,765,619 - 28,779,906 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01919,899,306 - 19,913,605 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,899,306 - 19,913,605 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01930,924,101 - 30,938,400 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41920,245,264 - 20,259,563 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11920,190,231 - 20,264,375 (-)NCBI
Celera1918,818,035 - 18,832,334 (-)NCBICelera
Cytogenetic Map19p11NCBI
Cnep1r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554338,161,994 - 8,176,258 (+)NCBIChiLan1.0ChiLan1.0
CNEP1R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,236,030 - 65,252,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,237,353 - 65,252,043 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,804,304 - 61,824,834 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0265,777,364 - 65,797,945 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl265,772,031 - 65,797,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1262,600,139 - 62,620,666 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0263,619,730 - 63,640,456 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0264,508,613 - 64,529,646 (-)NCBIUU_Cfam_GSD_1.0
Cnep1r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934956,412,860 - 56,425,812 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364753,162,995 - 3,176,669 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364753,163,275 - 3,176,210 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNEP1R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl634,775,446 - 34,788,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1634,775,444 - 34,788,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CNEP1R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1535,827,194 - 35,838,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl535,827,245 - 35,840,575 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604740,672,100 - 40,683,728 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnep1r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247576,599,592 - 6,615,699 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247576,601,395 - 6,615,307 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000032194   ⟹   ENSPPAP00000009551
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1649,172,711 - 49,184,592 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000032196   ⟹   ENSPPAP00000009553
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1649,172,711 - 49,184,592 (+)Ensembl
RefSeq Acc Id: XM_003819809   ⟹   XP_003819857
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21859,482,615 - 59,494,520 (+)NCBI
NHGRI_mPanPan11665,387,660 - 65,399,570 (+)NCBI
Mhudiblu_PPA_v01630,288,552 - 30,300,444 (+)NCBI
PanPan1.11649,172,711 - 49,184,592 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003819810   ⟹   XP_003819858
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21859,482,647 - 59,494,520 (+)NCBI
NHGRI_mPanPan11665,387,689 - 65,399,570 (+)NCBI
Mhudiblu_PPA_v01630,288,552 - 30,300,444 (+)NCBI
PanPan1.11649,172,711 - 49,184,592 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003819857 (Get FASTA)   NCBI Sequence Viewer  
  XP_003819858 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009551
  ENSPPAP00000009551.1
  ENSPPAP00000009553
  ENSPPAP00000009553.1
Reference Protein Sequences
RefSeq Acc Id: XP_003819858   ⟸   XM_003819810
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZX45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003819857   ⟸   XM_003819809
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A0V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000009553   ⟸   ENSPPAT00000032196
RefSeq Acc Id: ENSPPAP00000009551   ⟸   ENSPPAT00000032194


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028006 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032194.1 UniProtKB/TrEMBL
  ENSPPAT00000032196.1 UniProtKB/TrEMBL
InterPro NEP1-R1 UniProtKB/TrEMBL
KEGG Report pps:100982871 UniProtKB/TrEMBL
NCBI Gene CNEP1R1 ENTREZGENE
PANTHER NUCLEAR ENVELOPE PHOSPHATASE-REGULATORY SUBUNIT 1 UniProtKB/TrEMBL
  PTHR20996 UniProtKB/TrEMBL
Pfam Tmemb_18A UniProtKB/TrEMBL
UniProt A0A2R8ZX45 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A0V8 ENTREZGENE, UniProtKB/TrEMBL