ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1) Pan paniscus
Analyze
Symbol: ST3GAL1
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 1
RGD ID: 11792999
Description: ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (inferred); glycosyltransferase activity (inferred); sialyltransferase activity (inferred); INVOLVED IN memory B cell differentiation (ortholog); N-acetylneuraminate metabolic process (ortholog); negative regulation of activated CD8-positive, alpha-beta T cell apoptotic process (ortholog); ASSOCIATED WITH Enterovirus Infections (ortholog); FOUND IN Golgi apparatus (inferred); Golgi medial cisterna membrane (inferred); Golgi trans cisterna membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18133,084,835 - 133,200,568 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8133,084,835 - 133,119,791 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08130,111,085 - 130,227,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
ST3GAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.18133,084,835 - 133,200,568 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8133,084,835 - 133,119,791 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v08130,111,085 - 130,227,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ST3GAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388133,454,848 - 133,571,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl8133,454,848 - 133,571,940 (-)EnsemblGRCh38hg38GRCh38
GRCh378134,467,091 - 134,584,130 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368134,540,312 - 134,653,344 (-)NCBINCBI36Build 36hg18NCBI36
Celera8130,644,441 - 130,761,532 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,786,027 - 129,903,172 (-)NCBIHuRef
CHM1_18134,508,613 - 134,625,711 (-)NCBICHM1_1
T2T-CHM13v2.08134,578,690 - 134,695,776 (-)NCBIT2T-CHM13v2.0
St3gal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,974,724 - 67,048,795 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,974,724 - 67,048,679 (-)EnsemblGRCm39 Ensembl
GRCm381567,102,875 - 67,176,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1567,102,875 - 67,176,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv371566,934,437 - 67,008,444 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,932,544 - 66,943,661 (-)NCBIMGSCv36mm8
Celera1568,631,078 - 68,705,126 (-)NCBICelera
Cytogenetic Map15D2NCBI
St3gal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2798,845,270 - 98,913,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,845,270 - 98,913,236 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,613,838 - 100,620,506 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07102,815,493 - 102,822,161 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07102,734,816 - 102,741,484 (-)NCBIRnor_WKY
Rnor_6.07107,895,045 - 107,963,158 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,895,045 - 107,963,142 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07107,844,100 - 107,912,117 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47104,467,678 - 104,474,345 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17104,501,908 - 104,508,575 (-)NCBI
Celera795,394,954 - 95,401,620 (-)NCBICelera
Cytogenetic Map7q34NCBI
St3gal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,960,690 - 7,976,183 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,960,901 - 8,036,221 (-)NCBIChiLan1.0ChiLan1.0
ST3GAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,853,182 - 29,949,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,846,834 - 29,872,918 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,830,205 - 29,927,340 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01330,212,500 - 30,309,474 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1330,212,502 - 30,309,314 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,938,815 - 30,035,946 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01330,038,392 - 30,135,676 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01330,387,979 - 30,485,232 (-)NCBIUU_Cfam_GSD_1.0
St3gal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053038,434,663 - 8,508,401 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647015,918,749 - 15,934,503 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647015,860,669 - 15,934,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl47,896,554 - 7,909,505 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.147,814,492 - 7,911,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.247,685,469 - 7,776,994 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,885,018 - 127,929,865 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,885,031 - 127,906,059 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603912,099,002 - 12,215,968 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473522,528,976 - 22,589,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473522,510,500 - 22,589,666 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000056626   ⟹   ENSPPAP00000033749
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8133,084,835 - 133,119,791 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056634   ⟹   ENSPPAP00000033758
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8133,089,749 - 133,106,056 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000056642   ⟹   ENSPPAP00000033766
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8133,089,749 - 133,106,056 (-)Ensembl
RefSeq Acc Id: XM_008955450   ⟹   XP_008953698
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.18133,084,835 - 133,200,568 (-)NCBI
Mhudiblu_PPA_v08130,111,085 - 130,227,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008955451   ⟹   XP_008953699
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.18133,084,835 - 133,119,791 (-)NCBI
Mhudiblu_PPA_v08130,115,309 - 130,146,005 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008953698 (Get FASTA)   NCBI Sequence Viewer  
  XP_008953699 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008953698   ⟸   XM_008955450
- UniProtKB: A0A2J8KEX7 (UniProtKB/TrEMBL),   A0A2R9C5E6 (UniProtKB/TrEMBL),   A0A6D2Y8P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008953699   ⟸   XM_008955451
- UniProtKB: A0A2J8KEX7 (UniProtKB/TrEMBL),   A0A2R9C5E6 (UniProtKB/TrEMBL),   A0A6D2Y8P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000033749   ⟸   ENSPPAT00000056626
RefSeq Acc Id: ENSPPAP00000033758   ⟸   ENSPPAT00000056634
RefSeq Acc Id: ENSPPAP00000033766   ⟸   ENSPPAT00000056642


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039735 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000033749 ENTREZGENE
  ENSPPAP00000033749.1 UniProtKB/TrEMBL
  ENSPPAP00000033758.1 UniProtKB/TrEMBL
  ENSPPAP00000033766.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056626.1 UniProtKB/TrEMBL
  ENSPPAT00000056634.1 UniProtKB/TrEMBL
  ENSPPAT00000056642.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report pps:100987531 UniProtKB/TrEMBL
NCBI Gene ST3GAL1 ENTREZGENE
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A2J8KEX7 ENTREZGENE
  A0A2R9BVQ5_PANPA UniProtKB/TrEMBL
  A0A2R9BWD2_PANPA UniProtKB/TrEMBL
  A0A2R9C5E6 ENTREZGENE, UniProtKB/TrEMBL
  A0A6D2Y8P2 ENTREZGENE