SESTD1 (SEC14 and spectrin domain containing 1) - Rat Genome Database

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Gene: SESTD1 (SEC14 and spectrin domain containing 1) Pan paniscus
Analyze
Symbol: SESTD1
Name: SEC14 and spectrin domain containing 1
RGD ID: 11792666
Description: ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); phosphatidylcholine binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (inferred); ASSOCIATED WITH genetic disease (ortholog); Weight Gain (ortholog); FOUND IN calcium channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEC14 domain and spectrin repeat-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21381,749,834 - 81,912,123 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B81,764,808 - 81,927,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B66,359,668 - 66,522,271 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B184,062,164 - 184,151,657 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B184,062,164 - 184,151,657 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SESTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21381,749,834 - 81,912,123 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B81,764,808 - 81,927,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B66,359,668 - 66,522,271 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B184,062,164 - 184,151,657 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B184,062,164 - 184,151,657 (-)Ensemblpanpan1.1panPan2
SESTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382179,101,678 - 179,264,832 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2179,101,678 - 179,264,832 (-)EnsemblGRCh38hg38GRCh38
GRCh372179,966,405 - 180,129,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362179,681,776 - 179,764,838 (-)NCBINCBI36Build 36hg18NCBI36
Build 342179,799,036 - 179,954,752NCBI
Celera2173,560,816 - 173,723,730 (-)NCBICelera
Cytogenetic Map2q31.2NCBI
HuRef2171,835,120 - 171,981,416 (-)NCBIHuRef
CHM1_12179,972,587 - 180,135,211 (-)NCBICHM1_1
T2T-CHM13v2.02179,584,873 - 179,748,044 (-)NCBIT2T-CHM13v2.0
Sestd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39277,010,684 - 77,111,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl277,010,684 - 77,110,936 (-)EnsemblGRCm39 Ensembl
GRCm38277,180,340 - 77,280,627 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl277,180,340 - 77,280,592 (-)EnsemblGRCm38mm10GRCm38
MGSCv37277,024,132 - 77,083,146 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36276,987,394 - 77,081,431 (-)NCBIMGSCv36mm8
Celera278,847,166 - 78,901,099 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map245.92NCBI
Sestd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,530,796 - 82,627,960 (-)NCBIGRCr8
mRatBN7.2362,123,590 - 62,220,759 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl362,129,887 - 62,220,546 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx365,485,187 - 65,553,738 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0374,068,858 - 74,137,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0371,837,190 - 71,905,634 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0364,037,814 - 64,134,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl364,044,112 - 64,095,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0370,613,828 - 70,702,994 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4359,872,507 - 59,875,174 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera361,613,696 - 61,682,509 (-)NCBICelera
Cytogenetic Map3q24NCBI
Sestd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540317,729,344 - 17,828,278 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540317,761,404 - 17,835,528 (+)NCBIChiLan1.0ChiLan1.0
SESTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13622,648,732 - 22,742,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3622,651,570 - 22,741,997 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3622,670,052 - 22,812,345 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03622,808,081 - 22,950,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3622,809,040 - 22,950,903 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13622,903,707 - 23,045,993 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03622,867,186 - 23,009,396 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03622,989,893 - 23,132,276 (-)NCBIUU_Cfam_GSD_1.0
Sestd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303139,670,921 - 139,749,332 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365098,225,245 - 8,303,279 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365098,225,252 - 8,303,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SESTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1584,760,451 - 84,849,319 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11584,762,923 - 84,892,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21594,262,733 - 94,388,673 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SESTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11064,628,812 - 64,779,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1064,629,913 - 64,779,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040134,771,715 - 134,922,468 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sestd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248441,029,054 - 1,133,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248441,029,054 - 1,133,268 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000051958   ⟹   ENSPPAP00000029110
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B184,062,164 - 184,151,657 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051962   ⟹   ENSPPAP00000029114
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B184,134,173 - 184,151,635 (-)Ensembl
RefSeq Acc Id: XM_034954591   ⟹   XP_034810482
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21381,749,834 - 81,912,123 (-)NCBI
NHGRI_mPanPan12B81,764,808 - 81,927,093 (-)NCBI
Mhudiblu_PPA_v02B66,359,668 - 66,522,271 (-)NCBI
RefSeq Acc Id: XM_034954592   ⟹   XP_034810483
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21381,749,834 - 81,830,405 (-)NCBI
NHGRI_mPanPan12B81,767,576 - 81,845,378 (-)NCBI
Mhudiblu_PPA_v02B66,359,668 - 66,440,302 (-)NCBI
RefSeq Acc Id: XM_055108824   ⟹   XP_054964799
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21381,749,834 - 81,911,629 (-)NCBI
NHGRI_mPanPan12B81,767,576 - 81,926,603 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034810482 (Get FASTA)   NCBI Sequence Viewer  
  XP_034810483 (Get FASTA)   NCBI Sequence Viewer  
  XP_054964799 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029110.1
  ENSPPAP00000029114.1
Reference Protein Sequences
RefSeq Acc Id: XP_034810482   ⟸   XM_034954591
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BHH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034810483   ⟸   XM_034954592
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000029114   ⟸   ENSPPAT00000051962
RefSeq Acc Id: ENSPPAP00000029110   ⟸   ENSPPAT00000051958
RefSeq Acc Id: XP_054964799   ⟸   XM_055108824
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BHH4 (UniProtKB/TrEMBL)
Protein Domains
CRAL-TRIO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037546 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051958.1 UniProtKB/TrEMBL
  ENSPPAT00000051962.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.60 UniProtKB/TrEMBL
InterPro CRAL-TRIO_dom UniProtKB/TrEMBL
NCBI Gene SESTD1 ENTREZGENE
PANTHER SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam CRAL_TRIO_2 UniProtKB/TrEMBL
PROSITE CRAL_TRIO UniProtKB/TrEMBL
Superfamily-SCOP Spectrin repeat UniProtKB/TrEMBL
UniProt A0A2R9BHH4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BHH7_PANPA UniProtKB/TrEMBL