APCS (amyloid P component, serum) - Rat Genome Database

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Gene: APCS (amyloid P component, serum) Pan paniscus
Analyze
Symbol: APCS
Name: amyloid P component, serum
RGD ID: 11791860
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); complement component C1q complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation by host of viral exo-alpha-sialidase activity (ortholog); negative regulation by host of viral glycoprotein metabolic process (ortholog); ASSOCIATED WITH amyloidosis (ortholog); congestive heart failure (ortholog); coronary artery disease (ortholog); FOUND IN extracellular space (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: serum amyloid P-component
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11138,734,046 - 138,735,093 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1138,734,046 - 138,735,093 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01134,937,472 - 134,938,512 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
APCS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11138,734,046 - 138,735,093 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1138,734,046 - 138,735,093 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01134,937,472 - 134,938,512 (+)NCBIMhudiblu_PPA_v0panPan3
APCS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1159,587,826 - 159,588,865 (+)EnsemblGRCh38hg38GRCh38
GRCh381159,587,826 - 159,588,865 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371159,557,616 - 159,558,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,824,240 - 157,825,285 (+)NCBINCBI36hg18NCBI36
Build 341156,370,688 - 156,371,733NCBI
Celera1132,627,015 - 132,628,060 (+)NCBI
Cytogenetic Map1q23.2NCBI
HuRef1130,914,686 - 130,915,731 (+)NCBIHuRef
CHM1_11160,953,113 - 160,954,158 (+)NCBICHM1_1
Apcs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,721,528 - 172,722,621 (-)NCBIGRCm39mm39
GRCm39 Ensembl1172,721,528 - 172,722,608 (-)Ensembl
GRCm381172,893,961 - 172,895,054 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,893,961 - 172,895,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,824,092 - 174,825,185 (-)NCBIGRCm37mm9NCBIm37
MGSCv361174,730,637 - 174,731,718 (-)NCBImm8
Celera1175,741,973 - 175,743,066 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.33NCBI
Apcs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21385,373,338 - 85,374,134 (-)NCBI
Rnor_6.0 Ensembl1391,426,479 - 91,427,575 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01391,426,621 - 91,427,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01395,938,118 - 95,938,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,112,845 - 89,113,641 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11389,301,610 - 89,302,610 (-)NCBI
Celera1384,980,649 - 84,981,445 (-)NCBICelera
Cytogenetic Map13q24NCBI
Apcs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546811,388,192 - 11,390,314 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546811,388,154 - 11,389,259 (+)NCBIChiLan1.0ChiLan1.0
Apcs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,767,140 - 5,768,100 (+)NCBI
SpeTri2.0NW_004936740979,007 - 987,312 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APCS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,898,686 - 90,901,875 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,900,585 - 90,901,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,901,214 - 98,901,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APCS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,360,955 - 4,363,810 (-)NCBI
ChlSab1.1 Ensembl204,358,654 - 4,362,095 (-)Ensembl
Vero_WHO_p1.0NW_0236660383,486,071 - 3,487,118 (-)NCBI
Apcs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247941,689,619 - 1,690,700 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003820969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000060670   ⟹   ENSPPAP00000037768
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1138,734,046 - 138,735,093 (+)Ensembl
RefSeq Acc Id: XM_003820969   ⟹   XP_003821017
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11138,734,046 - 138,735,093 (+)NCBI
Mhudiblu_PPA_v01134,937,472 - 134,938,512 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003821017 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003821017   ⟸   XM_003820969
- Sequence:
RefSeq Acc Id: ENSPPAP00000037768   ⟸   ENSPPAT00000060670


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000037768 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060670 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  Pentaxin_CS UniProtKB/TrEMBL
  Pentraxin-related UniProtKB/TrEMBL
KEGG Report pps:100972966 UniProtKB/TrEMBL
NCBI Gene APCS ENTREZGENE
Pfam Pentaxin UniProtKB/TrEMBL
PRINTS PENTAXIN UniProtKB/TrEMBL
PROSITE PTX_1 UniProtKB/TrEMBL
  PTX_2 UniProtKB/TrEMBL
SMART PTX UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A2R9C9Y7_PANPA UniProtKB/TrEMBL