STRADA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 79,875,018 - 79,914,472 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 84,692,466 - 84,732,320 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 57,783,114 - 57,822,056 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 62,929,065 - 62,967,021 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 62,929,065 - 62,967,021 (-) | Ensembl | panpan1.1 | | panPan2 | |
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STRADA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 63,702,832 - 63,741,986 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 63,682,336 - 63,741,986 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 61,780,192 - 61,819,346 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 59,133,927 - 59,172,947 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 17 | 56,168,312 - 56,207,450 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | q23.3 | NCBI | | | | | HuRef | 17 | 57,148,274 - 57,187,415 (-) | NCBI | | HuRef | | | CHM1_1 | 17 | 61,844,604 - 61,883,729 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 64,573,741 - 64,612,901 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Strada (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 106,053,739 - 106,084,460 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 106,054,156 - 106,092,994 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 106,162,974 - 106,193,634 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 106,163,330 - 106,202,168 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 106,024,650 - 106,054,862 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 105,979,426 - 106,009,638 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 117,893,554 - 117,923,982 (-) | NCBI | | Celera | | | Cytogenetic Map | 11 | E1 | NCBI | | | | | cM Map | 11 | 68.89 | NCBI | | | | |
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Strada (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 91,594,648 - 91,623,710 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 91,094,849 - 91,123,890 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 91,094,687 - 91,123,830 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 96,149,477 - 96,178,478 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 95,612,647 - 95,641,646 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 91,023,409 - 91,052,378 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 94,355,369 - 94,384,404 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 94,355,384 - 94,384,339 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 94,104,039 - 94,133,334 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 95,557,836 - 95,586,792 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 95,572,205 - 95,601,162 (-) | NCBI | | | | | Celera | 10 | 89,770,859 - 89,799,791 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q32.1 | NCBI | | | | |
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Strada (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955478 | 8,082,075 - 8,116,543 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955478 | 8,082,075 - 8,116,320 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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STRADA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 11,684,905 - 11,712,515 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 11,684,663 - 11,712,432 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 12,644,872 - 12,672,483 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 13,345,671 - 13,373,462 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 13,344,809 - 13,373,416 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 12,292,740 - 12,320,302 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 15,211,662 - 15,239,452 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 15,214,249 - 15,242,300 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Strada (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 14,809,020 - 14,842,196 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936541 | 4,349,878 - 4,385,596 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936541 | 4,352,613 - 4,385,499 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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STRADA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 12 | 15,191,782 - 15,223,558 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 15,191,793 - 15,222,709 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 15,181,660 - 15,210,365 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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STRADA (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 16 | 57,550,698 - 57,587,995 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 16 | 57,550,703 - 57,588,084 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666077 | 28,159,755 - 28,199,016 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Strada (Heterocephalus glaber - naked mole-rat) |
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