IDH1 (isocitrate dehydrogenase (NADP(+)) 1) - Rat Genome Database

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Gene: IDH1 (isocitrate dehydrogenase (NADP(+)) 1) Pan paniscus
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Symbol: IDH1
Name: isocitrate dehydrogenase (NADP(+)) 1
RGD ID: 11785899
Description: ENCODES a protein that exhibits isocitrate dehydrogenase (NADP+) activity (ortholog); NADP binding (ortholog); INVOLVED IN female gonad development (ortholog); glutathione metabolic process (ortholog); isocitrate metabolic process (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: isocitrate dehydrogenase (NADP(+)) 1, cytosolic; isocitrate dehydrogenase [NADP] cytoplasmic
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,846,026 - 110,865,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,861,000 - 110,891,100 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,475,320 - 95,494,286 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,599,036 - 213,628,840 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,599,036 - 213,617,175 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IDH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,846,026 - 110,865,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,861,000 - 110,891,100 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,475,320 - 95,494,286 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,599,036 - 213,628,840 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,599,036 - 213,617,175 (-)Ensemblpanpan1.1panPan2
IDH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382208,236,227 - 208,255,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2208,236,229 - 208,266,074 (-)EnsemblGRCh38hg38GRCh38
GRCh372209,100,951 - 209,119,795 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,809,198 - 208,828,051 (-)NCBINCBI36Build 36hg18NCBI36
Build 342208,926,459 - 208,945,312NCBI
Celera2202,868,863 - 202,887,731 (-)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2200,949,019 - 200,967,890 (-)NCBIHuRef
CHM1_12209,106,806 - 209,125,662 (-)NCBICHM1_1
T2T-CHM13v2.02208,716,002 - 208,734,866 (-)NCBIT2T-CHM13v2.0
Idh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,197,775 - 65,225,638 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,197,775 - 65,225,659 (-)EnsemblGRCm39 Ensembl
GRCm38165,158,616 - 65,186,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,158,616 - 65,186,500 (-)EnsemblGRCm38mm10GRCm38
MGSCv37165,205,190 - 65,233,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,092,904 - 65,113,390 (-)NCBIMGSCv36mm8
Celera165,649,214 - 65,677,085 (-)NCBICelera
Cytogenetic Map1C2- C3NCBI
cM Map132.91NCBI
Idh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8974,027,887 - 74,057,442 (-)NCBIGRCr8
mRatBN7.2966,534,146 - 66,563,703 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,534,146 - 66,563,708 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx975,040,843 - 75,062,176 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0980,176,139 - 80,197,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0978,586,353 - 78,607,819 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0971,882,108 - 71,911,645 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl971,882,105 - 71,900,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0970,660,443 - 70,689,968 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,769,401 - 63,790,622 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1963,916,382 - 63,937,604 (-)NCBI
Celera963,929,810 - 63,951,008 (-)NCBICelera
Cytogenetic Map9q32NCBI
Idh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554576,851,517 - 6,872,367 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554576,851,542 - 6,869,452 (+)NCBIChiLan1.0ChiLan1.0
IDH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,512,027 - 16,531,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,512,770 - 16,531,219 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3717,394,694 - 17,413,933 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03716,447,690 - 16,466,938 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,447,695 - 16,466,985 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13716,391,770 - 16,406,979 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03716,365,144 - 16,384,346 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03716,374,393 - 16,393,573 (-)NCBIUU_Cfam_GSD_1.0
Idh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303164,878,089 - 164,892,414 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936950334,934 - 348,363 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936950334,894 - 349,221 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IDH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15111,341,153 - 111,362,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115111,341,153 - 111,362,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215122,861,672 - 122,883,887 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IDH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11094,021,002 - 94,039,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1094,020,818 - 94,039,975 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040105,331,403 - 105,350,750 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Idh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247657,806,560 - 7,825,520 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000055560   ⟹   ENSPPAP00000032690
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B213,599,036 - 213,617,175 (-)Ensembl
RefSeq Acc Id: XM_008974278   ⟹   XP_008972526
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213110,846,026 - 110,864,317 (-)NCBI
NHGRI_mPanPan12B110,861,000 - 110,879,265 (-)NCBI
Mhudiblu_PPA_v02B95,475,320 - 95,493,457 (-)NCBI
PanPan1.12B213,599,036 - 213,617,175 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055109047   ⟹   XP_054965022
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213110,846,026 - 110,865,064 (-)NCBI
NHGRI_mPanPan12B110,861,000 - 110,891,100 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008972526 (Get FASTA)   NCBI Sequence Viewer  
  XP_054965022 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000032690.1
RefSeq Acc Id: XP_008972526   ⟸   XM_008974278
- UniProtKB: A0A2R9BW49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000032690   ⟸   ENSPPAT00000055560
RefSeq Acc Id: XP_054965022   ⟸   XM_055109047

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039215 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000055560.1 UniProtKB/TrEMBL
Gene3D-CATH Isopropylmalate Dehydrogenase UniProtKB/TrEMBL
InterPro IsoCit/isopropylmalate_DH_CS UniProtKB/TrEMBL
  Isocitrate_DH_NADP UniProtKB/TrEMBL
  IsoPropMal-DH-like_dom UniProtKB/TrEMBL
KEGG Report pps:100980780 UniProtKB/TrEMBL
NCBI Gene IDH1 ENTREZGENE
PANTHER ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC UniProtKB/TrEMBL
  PTHR11822 UniProtKB/TrEMBL
Pfam Iso_dh UniProtKB/TrEMBL
PIRSF IDH_NADP UniProtKB/TrEMBL
PROSITE IDH_IMDH UniProtKB/TrEMBL
SMART Iso_dh UniProtKB/TrEMBL
Superfamily-SCOP Isocitrate/Isopropylmalate dehydrogenase-like UniProtKB/TrEMBL
UniProt A0A2R9BW49 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 IDH1  isocitrate dehydrogenase (NADP(+)) 1  IDH1  isocitrate dehydrogenase (NADP(+)) 1, cytosolic  Symbol and/or name change 5135510 APPROVED