CCL26 (C-C motif chemokine ligand 26) - Rat Genome Database

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Gene: CCL26 (C-C motif chemokine ligand 26) Pan paniscus
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Symbol: CCL26
Name: C-C motif chemokine ligand 26
RGD ID: 11785225
Description: ENCODES a protein that exhibits CCR3 chemokine receptor binding (inferred); chemokine activity (inferred); CX3C chemokine receptor binding (inferred); INVOLVED IN response to organonitrogen compound (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH allergic asthma (ortholog); allergic rhinitis (ortholog); asthma (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C motif chemokine 26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1782,221,846 - 82,242,874 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl782,221,846 - 82,242,874 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0768,230,804 - 68,251,369 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CCL26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1782,221,846 - 82,242,874 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl782,221,846 - 82,242,874 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0768,230,804 - 68,251,369 (+)NCBIMhudiblu_PPA_v0panPan3
CCL26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38775,769,524 - 75,791,597 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl775,769,533 - 75,789,896 (-)EnsemblGRCh38hg38GRCh38
GRCh37775,398,842 - 75,420,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,236,778 - 75,257,000 (-)NCBINCBI36hg18NCBI36
Build 34775,043,492 - 75,063,715NCBI
Celera770,266,590 - 70,286,812 (-)NCBI
Cytogenetic Map7q11.23NCBI
HuRef770,484,790 - 70,505,408 (-)NCBIHuRef
CHM1_1775,328,822 - 75,349,108 (-)NCBICHM1_1
T2T-CHM13v2.0777,056,596 - 77,078,673 (-)NCBI
CRA_TCAGchr7v2774,731,906 - 74,752,128 (-)NCBI
Ccl26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,589,302 - 135,592,423 (-)NCBIGRCm39mm39
GRCm39 Ensembl5135,589,302 - 135,592,423 (-)Ensembl
GRCm385135,560,448 - 135,563,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,560,448 - 135,563,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv375136,036,318 - 136,039,439 (-)NCBIGRCm37mm9NCBIm37
MGSCv365135,845,075 - 135,848,196 (-)NCBImm8
Celera5132,571,981 - 132,575,102 (-)NCBICelera
Cytogenetic Map5G2NCBI
Ccl26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21221,109,384 - 21,114,336 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1221,109,421 - 21,114,335 (+)Ensembl
Rnor_6.01224,157,182 - 24,161,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,158,766 - 24,161,869 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,154,496 - 26,159,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,265,430 - 22,268,793 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1222,873,373 - 22,876,736 (+)NCBICelera
Cytogenetic Map12q12NCBI
Ccl26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545614,554,583 - 14,558,967 (-)NCBIChiLan1.0ChiLan1.0
CCL26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,151,352 - 7,154,509 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,151,212 - 7,154,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,848,112 - 8,851,272 (-)NCBI
ROS_Cfam_1.066,971,954 - 6,975,124 (-)NCBI
ROS_Cfam_1.0 Ensembl66,971,814 - 6,981,222 (-)Ensembl
UMICH_Zoey_3.166,941,498 - 6,944,666 (-)NCBI
UNSW_CanFamBas_1.066,904,900 - 6,908,069 (-)NCBI
UU_Cfam_GSD_1.067,068,177 - 7,071,344 (-)NCBI
Ccl26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,619,608 - 131,626,877 (-)NCBI
SpeTri2.0NW_0049365432,414,948 - 2,416,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,381,296 - 10,385,796 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,381,306 - 10,385,677 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCL26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,036,177 - 10,038,962 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,036,337 - 10,038,875 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660706,400,433 - 6,403,167 (+)NCBIVero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063070   ⟹   ENSPPAP00000040156
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl782,221,846 - 82,242,874 (-)Ensembl
RefSeq Acc Id: XM_003808926   ⟹   XP_003808974
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1782,221,846 - 82,242,874 (-)NCBI
Mhudiblu_PPA_v0768,230,804 - 68,251,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034965413   ⟹   XP_034821304
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0768,248,466 - 68,251,369 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003808974 (Get FASTA)   NCBI Sequence Viewer  
  XP_034821304 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003808974   ⟸   XM_003808926
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034821304   ⟸   XM_034965413
- Peptide Label: isoform X1
RefSeq Acc Id: ENSPPAP00000040156   ⟸   ENSPPAT00000063070
Protein Domains
SCY


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042736 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000040156 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063070 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report pps:100993169 UniProtKB/TrEMBL
NCBI Gene CCL26 ENTREZGENE
PANTHER PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A2R9CDY7_PANPA UniProtKB/TrEMBL