PTGES3L (prostaglandin E synthase 3 like) - Rat Genome Database

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Gene: PTGES3L (prostaglandin E synthase 3 like) Pan paniscus
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Symbol: PTGES3L
Name: prostaglandin E synthase 3 like
RGD ID: 11782953
Description: ENCODES a protein that exhibits alanine-tRNA ligase activity (inferred); aminoacyl-tRNA editing activity (inferred); aminoacyl-tRNA ligase activity (inferred); INVOLVED IN alanyl-tRNA aminoacylation (inferred); aminoacyl-tRNA metabolism involved in translational fidelity (inferred); chaperone-mediated protein complex assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative protein PTGES3L
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,012,108 - 22,022,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,901,378 - 23,911,801 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,344,870 - 14,355,271 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,572,643 - 14,582,795 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PTGES3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,012,108 - 22,022,533 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11723,901,378 - 23,911,801 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,344,870 - 14,355,271 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11714,572,643 - 14,582,795 (+)NCBIpanpan1.1PanPan1.1panPan2
PTGES3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,968,103 - 42,980,080 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,968,088 - 42,980,433 (-)EnsemblGRCh38hg38GRCh38
GRCh371741,120,120 - 41,132,097 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q21.31NCBI
HuRef1736,885,800 - 36,898,226 (-)NCBIHuRef
CHM1_11741,355,627 - 41,368,050 (-)NCBICHM1_1
T2T-CHM13v2.01743,825,128 - 43,837,352 (-)NCBIT2T-CHM13v2.0
Ptges3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,309,634 - 101,316,154 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,309,638 - 101,316,159 (-)EnsemblGRCm39 Ensembl
GRCm3811101,418,808 - 101,425,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,418,812 - 101,425,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711101,280,128 - 101,286,647 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611101,234,904 - 101,241,423 (-)NCBIMGSCv36mm8
Celera11113,106,239 - 113,112,760 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.98NCBI
Ptges3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,854,268 - 86,861,568 (-)NCBIGRCr8
mRatBN7.21086,354,019 - 86,361,318 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1086,354,019 - 86,361,897 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1091,392,230 - 91,398,541 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,867,012 - 90,873,461 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01086,260,318 - 86,266,767 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01089,331,368 - 89,338,644 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1089,331,701 - 89,338,739 (-)EnsemblRnor6.0rn6Rnor6.0
RGSC_v3.41090,016,814 - 90,026,748 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1085,072,234 - 85,078,766 (-)NCBICelera
Cytogenetic Map10q31NCBI
PTGES3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,080,611 - 20,085,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,541,937 - 19,547,518 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0920,798,766 - 20,804,347 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl920,799,501 - 20,822,137 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,583,858 - 19,589,439 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0919,850,559 - 19,856,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,952,657 - 19,958,237 (+)NCBIUU_Cfam_GSD_1.0
Ptges3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,395,132 - 19,401,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,674,504 - 17,679,836 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,673,396 - 17,679,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTGES3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,909,043 - 19,915,847 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,909,037 - 19,915,852 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PTGES3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,313,688 - 63,318,930 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,313,122 - 63,319,153 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,079,153 - 34,107,750 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_014342023   ⟹   XP_014197509
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,012,108 - 22,022,533 (+)NCBI
NHGRI_mPanPan11723,901,378 - 23,911,801 (+)NCBI
Mhudiblu_PPA_v01714,344,870 - 14,355,271 (+)NCBI
PanPan1.11714,572,643 - 14,582,795 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034941791   ⟹   XP_034797682
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,012,480 - 22,022,533 (+)NCBI
NHGRI_mPanPan11723,901,762 - 23,911,801 (+)NCBI
Mhudiblu_PPA_v01714,344,870 - 14,355,271 (+)NCBI
RefSeq Acc Id: XM_063599024   ⟹   XP_063455094
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,012,480 - 22,014,462 (+)NCBI
Protein Sequences
Protein RefSeqs XP_014197509 (Get FASTA)   NCBI Sequence Viewer  
  XP_034797682 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455094 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018794.1
  ENSPPAP00000018797
  ENSPPAP00000018797.1
RefSeq Acc Id: XP_014197509   ⟸   XM_014342023
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AN52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034797682   ⟸   XM_034941791
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063455094   ⟸   XM_063599024
- Peptide Label: isoform X1

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032539 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000041536.1 UniProtKB/TrEMBL
  ENSPPAT00000041539.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.30.130 UniProtKB/TrEMBL
  2.60.40.790 UniProtKB/TrEMBL
InterPro Ala-tRNA-synth_IIc_core UniProtKB/TrEMBL
  CS_dom UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
  p23-like UniProtKB/TrEMBL
  Thr/Ala-tRNA-synth_IIc_edit UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
  tRNA_SAD UniProtKB/TrEMBL
NCBI Gene PTGES3L ENTREZGENE
PANTHER ALANYL-TRNA EDITING PROTEIN UniProtKB/TrEMBL
  ALANYL-TRNA EDITING PROTEIN AARSD1 UniProtKB/TrEMBL
  PROTEIN PTGES3L-RELATED UniProtKB/TrEMBL
  PTHR22932 UniProtKB/TrEMBL
Pfam tRNA_SAD UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_II_ALA UniProtKB/TrEMBL
  PS51203 UniProtKB/TrEMBL
SMART tRNA_SAD UniProtKB/TrEMBL
Superfamily-SCOP SSF49764 UniProtKB/TrEMBL
  SSF50447 UniProtKB/TrEMBL
  SSF55186 UniProtKB/TrEMBL
UniProt A0A2R9AN52 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AV35_PANPA UniProtKB/TrEMBL