HIP1 (huntingtin interacting protein 1) - Rat Genome Database

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Gene: HIP1 (huntingtin interacting protein 1) Pan paniscus
Analyze
Symbol: HIP1
Name: huntingtin interacting protein 1
RGD ID: 11780350
Description: ENCODES a protein that exhibits actin filament binding (ortholog); AP-2 adaptor complex binding (ortholog); clathrin binding (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); clathrin coat assembly (ortholog); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: huntingtin-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2694,215,412 - 94,420,460 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17142,480,052 - 142,685,098 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0768,281,899 - 68,464,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,187,193 - 82,193,058 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2694,215,412 - 94,420,460 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17142,480,052 - 142,685,098 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0768,281,899 - 68,464,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,187,193 - 82,193,058 (-)NCBIpanpan1.1PanPan1.1panPan2
HIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38775,533,298 - 75,738,941 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl775,533,298 - 75,738,962 (-)EnsemblGRCh38hg38GRCh38
GRCh37775,162,619 - 75,368,259 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,001,345 - 75,206,215 (-)NCBINCBI36Build 36hg18NCBI36
Build 34774,808,059 - 75,012,930NCBI
Celera770,031,212 - 70,236,048 (-)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef770,248,359 - 70,453,525 (-)NCBIHuRef
CHM1_1775,092,714 - 75,298,283 (-)NCBICHM1_1
T2T-CHM13v2.0776,820,630 - 77,026,024 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2774,495,683 - 74,701,354 (-)NCBI
Hip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,435,350 - 135,574,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,435,385 - 135,573,974 (-)EnsemblGRCm39 Ensembl
GRCm385135,406,496 - 135,545,323 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,406,531 - 135,545,120 (-)EnsemblGRCm38mm10GRCm38
MGSCv375135,882,388 - 136,020,992 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,692,653 - 135,829,742 (-)NCBIMGSCv36mm8
Celera5132,418,220 - 132,556,655 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.18NCBI
Hip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,769,868 - 26,904,367 (+)NCBIGRCr8
mRatBN7.21221,133,364 - 21,267,796 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,133,406 - 21,267,725 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,275,219 - 22,409,598 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,887,561 - 23,021,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,954,027 - 22,088,410 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,180,795 - 24,315,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,180,937 - 24,315,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,178,145 - 26,312,676 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,287,861 - 22,422,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11222,396,520 - 22,408,493 (+)NCBI
Celera1222,895,802 - 23,030,274 (+)NCBICelera
Cytogenetic Map12q12NCBI
Hip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,392,921 - 14,529,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,389,282 - 14,529,317 (-)NCBIChiLan1.0ChiLan1.0
HIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,957,760 - 7,115,676 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,961,053 - 7,115,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,654,406 - 8,812,467 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,778,147 - 6,936,340 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,778,151 - 6,936,438 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,747,968 - 6,905,918 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,711,133 - 6,869,280 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,874,374 - 7,032,555 (-)NCBIUU_Cfam_GSD_1.0
Hip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,467,552 - 131,540,287 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,522,154 - 2,565,376 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,496,301 - 2,569,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,416,475 - 10,578,366 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,416,418 - 10,578,374 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,176,878 - 10,282,562 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,805,985 - 10,007,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,807,672 - 9,914,047 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660706,432,081 - 6,658,245 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,464,372 - 14,607,130 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474014,460,742 - 14,607,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034965384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055114567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055114569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055114570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055114571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055114572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_055114567   ⟹   XP_054970542
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,215,412 - 94,415,486 (+)NCBI
NHGRI_mPanPan17142,480,053 - 142,680,128 (+)NCBI
RefSeq Acc Id: XM_055114569   ⟹   XP_054970544
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,215,413 - 94,420,460 (+)NCBI
NHGRI_mPanPan17142,480,053 - 142,685,098 (+)NCBI
RefSeq Acc Id: XM_055114570   ⟹   XP_054970545
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,340,546 - 94,415,486 (+)NCBI
NHGRI_mPanPan17142,605,176 - 142,680,127 (+)NCBI
RefSeq Acc Id: XM_055114571   ⟹   XP_054970546
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,313,711 - 94,415,485 (+)NCBI
NHGRI_mPanPan17142,578,349 - 142,680,127 (+)NCBI
RefSeq Acc Id: XM_055114572   ⟹   XP_054970547
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,340,548 - 94,420,460 (+)NCBI
NHGRI_mPanPan17142,605,178 - 142,685,098 (+)NCBI
RefSeq Acc Id: XM_057302890   ⟹   XP_057158873
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,313,698 - 94,420,460 (+)NCBI
NHGRI_mPanPan17142,578,336 - 142,685,098 (+)NCBI
RefSeq Acc Id: XM_063605927   ⟹   XP_063461997
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,331,476 - 94,415,486 (+)NCBI
RefSeq Acc Id: XM_063605928   ⟹   XP_063461998
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,331,476 - 94,420,460 (+)NCBI
RefSeq Acc Id: XM_063605929   ⟹   XP_063461999
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,331,479 - 94,420,460 (+)NCBI
RefSeq Acc Id: XM_063605930   ⟹   XP_063462000
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2694,371,533 - 94,415,485 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_054970544   ⟸   XM_055114569
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054970542   ⟸   XM_055114567
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054970546   ⟸   XM_055114571
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054970545   ⟸   XM_055114570
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054970547   ⟸   XM_055114572
- Peptide Label: isoform X8
RefSeq Acc Id: XP_057158873   ⟸   XM_057302890
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063461998   ⟸   XM_063605928
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063461997   ⟸   XM_063605927
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461999   ⟸   XM_063605929
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063462000   ⟸   XM_063605930
- Peptide Label: isoform X10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027252 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030665.1 UniProtKB/TrEMBL
NCBI Gene HIP1 ENTREZGENE
UniProt A0A2R8ZST6_PANPA UniProtKB/TrEMBL