SNX3 (sorting nexin 3) - Rat Genome Database

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Gene: SNX3 (sorting nexin 3) Pan paniscus
Analyze
Symbol: SNX3
Name: sorting nexin 3
RGD ID: 11779781
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN hemoglobin biosynthetic process (ortholog); intralumenal vesicle formation (ortholog); membrane invagination (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH COVID-19 (ortholog); syndromic microphthalmia 8 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sorting nexin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16109,874,095 - 109,924,185 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6109,874,105 - 109,924,185 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06106,010,633 - 106,063,331 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SNX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16109,874,095 - 109,924,185 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6109,874,105 - 109,924,185 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06106,010,633 - 106,063,331 (-)NCBIMhudiblu_PPA_v0panPan3
SNX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6108,211,222 - 108,261,246 (-)EnsemblGRCh38hg38GRCh38
GRCh386108,211,222 - 108,261,040 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376108,532,426 - 108,582,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366108,639,410 - 108,689,156 (-)NCBINCBI36hg18NCBI36
Build 346108,639,410 - 108,689,156NCBI
Celera6109,279,209 - 109,328,955 (-)NCBI
Cytogenetic Map6q21NCBI
HuRef6106,100,989 - 106,150,564 (-)NCBIHuRef
CHM1_16108,795,674 - 108,845,435 (-)NCBICHM1_1
Snx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391042,378,050 - 42,411,365 (+)NCBIGRCm39mm39
GRCm39 Ensembl1042,378,026 - 42,411,377 (+)Ensembl
GRCm381042,502,054 - 42,535,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1042,502,030 - 42,535,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,221,860 - 42,255,175 (+)NCBIGRCm37mm9NCBIm37
MGSCv361042,190,444 - 42,223,782 (+)NCBImm8
Celera1043,369,479 - 43,403,088 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.89NCBI
Snx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22045,992,446 - 46,025,361 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl2047,225,619 - 47,263,390 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02047,225,382 - 47,263,390 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02048,923,090 - 48,932,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2053,947,195 - 53,979,808 (-)NCBICelera
Cytogenetic Map20q13NCBI
Snx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541133,340,274 - 33,345,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541133,339,974 - 33,344,563 (-)NCBIChiLan1.0ChiLan1.0
SNX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11265,252,175 - 65,294,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1265,252,175 - 65,294,611 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1265,067,774 - 65,110,209 (-)NCBI
ROS_Cfam_1.01266,127,936 - 66,170,477 (-)NCBI
UMICH_Zoey_3.11265,483,130 - 65,525,574 (-)NCBI
UNSW_CanFamBas_1.01265,329,591 - 65,371,812 (-)NCBI
UU_Cfam_GSD_1.01265,602,544 - 65,644,998 (-)NCBI
Snx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,197,614 - 100,245,855 (-)NCBI
SpeTri2.0NW_0049365644,472,171 - 4,520,732 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl174,306,453 - 74,349,335 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1174,306,450 - 74,349,735 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2183,576,787 - 83,585,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11365,590,413 - 65,640,368 (+)NCBI
ChlSab1.1 Ensembl1365,589,801 - 65,640,876 (+)Ensembl
Vero_WHO_p1.0NW_02366604037,916,042 - 37,966,796 (+)NCBI
Snx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478014,043,002 - 14,080,380 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000041239   ⟹   ENSPPAP00000018507
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6109,874,105 - 109,924,185 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000041255   ⟹   ENSPPAP00000018523
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6109,875,027 - 109,923,824 (-)Ensembl
RefSeq Acc Id: XM_003824327   ⟹   XP_003824375
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16109,874,095 - 109,924,185 (-)NCBI
Mhudiblu_PPA_v06106,010,633 - 106,063,331 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008978062   ⟹   XP_008976310
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16109,874,391 - 109,924,185 (-)NCBI
Mhudiblu_PPA_v06106,010,633 - 106,063,315 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003824375 (Get FASTA)   NCBI Sequence Viewer  
  XP_008976310 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003824375   ⟸   XM_003824327
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008976310   ⟸   XM_008978062
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000018523   ⟸   ENSPPAT00000041255
RefSeq Acc Id: ENSPPAP00000018507   ⟸   ENSPPAT00000041239


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032382 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000018507 ENTREZGENE
NCBI Gene SNX3 ENTREZGENE