PRICKLE2 (prickle planar cell polarity protein 2) - Rat Genome Database
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Gene: PRICKLE2 (prickle planar cell polarity protein 2) Pan paniscus
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Symbol: PRICKLE2
Name: prickle planar cell polarity protein 2
RGD ID: 11778242
Description: INVOLVED IN blastocyst formation (ortholog); establishment of cell polarity (ortholog); establishment or maintenance of epithelial cell apical/basal polarity (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); epilepsy (ortholog); Liver Neoplasms (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cytoplasm (ortholog); lateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: prickle-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1365,374,853 - 65,723,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,377,760 - 65,723,662 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0363,995,566 - 64,347,679 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PRICKLE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1365,374,853 - 65,723,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,377,760 - 65,723,662 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0363,995,566 - 64,347,679 (-)NCBIMhudiblu_PPA_v0panPan3
PRICKLE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl364,092,236 - 64,445,476 (-)EnsemblGRCh38hg38GRCh38
GRCh38364,092,236 - 64,445,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37364,077,912 - 64,253,849 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36364,054,587 - 64,186,171 (-)NCBINCBI36hg18NCBI36
Build 34364,054,590 - 64,186,171NCBI
Celera364,096,295 - 64,227,889 (-)NCBI
Cytogenetic Map3p14.1NCBI
HuRef364,176,650 - 64,308,225 (-)NCBIHuRef
CHM1_1364,030,867 - 64,162,475 (-)NCBICHM1_1
Prickle2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,347,873 - 92,683,464 (-)NCBIGRCm39mm39
GRCm39 Ensembl692,347,889 - 92,683,136 (-)Ensembl
GRCm38692,370,891 - 92,706,334 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,370,908 - 92,706,155 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,320,886 - 92,656,178 (-)NCBIGRCm37mm9NCBIm37
MGSCv36692,341,450 - 92,671,688 (-)NCBImm8
Celera694,262,178 - 94,597,798 (-)NCBICelera
Cytogenetic Map6D1NCBI
Prickle2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24124,869,552 - 125,214,862 (-)NCBI
Rnor_6.0 Ensembl4124,238,167 - 124,338,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04124,238,167 - 124,584,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04188,680,318 - 189,025,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,571,461 - 126,920,730 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14126,820,833 - 126,938,959 (-)NCBI
Celera4113,786,958 - 114,131,482 (-)NCBICelera
Cytogenetic Map4q34NCBI
Prickle2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555171,501,706 - 1,802,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555171,501,322 - 1,806,996 (+)NCBIChiLan1.0ChiLan1.0
PRICKLE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2026,809,958 - 27,220,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12026,810,167 - 27,131,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Prickle2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366372,225,400 - 2,299,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRICKLE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1345,620,367 - 45,968,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11345,620,372 - 45,968,295 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21350,094,626 - 50,263,960 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRICKLE2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12225,128,160 - 25,481,385 (-)NCBI
ChlSab1.1 Ensembl2225,133,352 - 25,303,131 (-)Ensembl
Prickle2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248881,537,080 - 1,825,955 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000050266   ⟹   ENSPPAP00000027426
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,377,760 - 65,479,765 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000050279   ⟹   ENSPPAP00000027439
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,380,037 - 65,723,662 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000050282   ⟹   ENSPPAP00000027442
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl365,380,037 - 65,505,793 (-)Ensembl
RefSeq Acc Id: XM_003811599   ⟹   XP_003811647
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1365,374,853 - 65,505,793 (-)NCBI
Mhudiblu_PPA_v0363,995,566 - 64,128,372 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008963991   ⟹   XP_008962239
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1365,374,853 - 65,548,144 (-)NCBI
Mhudiblu_PPA_v0363,995,566 - 64,169,924 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008963993   ⟹   XP_008962241
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1365,374,853 - 65,505,350 (-)NCBI
Mhudiblu_PPA_v0363,995,566 - 64,128,371 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034956835   ⟹   XP_034812726
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0363,995,566 - 64,347,679 (-)NCBI
RefSeq Acc Id: XM_034956836   ⟹   XP_034812727
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0363,995,566 - 64,061,556 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008962239   ⟸   XM_008963991
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003811647   ⟸   XM_003811599
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008962241   ⟸   XM_008963993
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034812726   ⟸   XM_034956835
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034812727   ⟸   XM_034956836
- Peptide Label: isoform X3
RefSeq Acc Id: ENSPPAP00000027426   ⟸   ENSPPAT00000050266
RefSeq Acc Id: ENSPPAP00000027439   ⟸   ENSPPAT00000050279
RefSeq Acc Id: ENSPPAP00000027442   ⟸   ENSPPAT00000050282
Protein Domains
LIM zinc-binding   PET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036788 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000027426 UniProtKB/TrEMBL
  ENSPPAP00000027439 UniProtKB/TrEMBL
  ENSPPAP00000027442 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050266 UniProtKB/TrEMBL
  ENSPPAT00000050279 UniProtKB/TrEMBL
  ENSPPAT00000050282 UniProtKB/TrEMBL
InterPro LIM1_prickle UniProtKB/TrEMBL
  LIM2_prickle UniProtKB/TrEMBL
  LIM3_prickle UniProtKB/TrEMBL
  PET_domain UniProtKB/TrEMBL
  PET_prickle UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report pps:100978097 UniProtKB/TrEMBL
NCBI Gene PRICKLE2 ENTREZGENE
Pfam LIM UniProtKB/TrEMBL
  PET UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PET UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
UniProt A0A2R9BCV0_PANPA UniProtKB/TrEMBL
  A0A2R9BE32_PANPA UniProtKB/TrEMBL
  A0A2R9BGL6_PANPA UniProtKB/TrEMBL