SH2D1A (SH2 domain containing 1A) - Rat Genome Database

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Gene: SH2D1A (SH2 domain containing 1A) Pan paniscus
Analyze
Symbol: SH2D1A
Name: SH2 domain containing 1A
RGD ID: 11777704
Description: INVOLVED IN humoral immune response (ortholog); natural killer cell mediated cytotoxicity (ortholog); positive regulation of natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Chediak-Higashi syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH2 domain-containing protein 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X123,819,657 - 123,846,697 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X123,823,266 - 123,850,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X113,538,321 - 113,565,468 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X123,712,932 - 123,739,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,712,932 - 123,739,419 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SH2D1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X123,819,657 - 123,846,697 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X123,823,266 - 123,850,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X113,538,321 - 113,565,468 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X123,712,932 - 123,739,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,712,932 - 123,739,419 (+)Ensemblpanpan1.1panPan2
SH2D1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X124,346,563 - 124,373,160 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX124,227,868 - 124,373,197 (+)EnsemblGRCh38hg38GRCh38
GRCh37X123,480,413 - 123,507,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X123,307,831 - 123,334,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X123,205,728 - 123,232,540NCBI
CeleraX123,864,695 - 123,891,574 (+)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX112,860,780 - 112,888,184 (+)NCBIHuRef
CHM1_1X123,391,547 - 123,418,040 (+)NCBICHM1_1
T2T-CHM13v2.0X122,657,134 - 122,683,529 (+)NCBIT2T-CHM13v2.0
Sh2d1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X41,591,442 - 41,610,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX41,591,330 - 41,618,207 (+)EnsemblGRCm39 Ensembl
GRCm38X42,502,565 - 42,522,097 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX42,502,453 - 42,529,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X39,855,785 - 39,875,252 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X38,747,235 - 38,766,702 (+)NCBIMGSCv36mm8
CeleraX30,076,629 - 30,095,977 (+)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.2NCBI
Sh2d1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X126,239,191 - 126,267,425 (+)NCBIGRCr8
mRatBN7.2X121,373,693 - 121,401,923 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_UtxX123,494,712 - 123,522,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X127,016,060 - 127,044,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X124,599,290 - 124,613,139 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X128,897,053 - 128,925,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX128,897,181 - 128,925,407 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X128,978,818 - 129,007,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X2,532,295 - 2,560,524 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX120,486,695 - 120,514,918 (+)NCBICelera
Cytogenetic MapXq35NCBI
Sh2d1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547310,346,943 - 10,370,575 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547310,345,407 - 10,370,535 (-)NCBIChiLan1.0ChiLan1.0
SH2D1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X95,739,568 - 95,762,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX95,739,669 - 95,760,698 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX81,806,674 - 81,829,216 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X97,524,200 - 97,546,969 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX97,524,314 - 97,546,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X94,955,406 - 94,977,948 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X96,711,780 - 96,734,289 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X96,501,732 - 96,524,277 (+)NCBIUU_Cfam_GSD_1.0
Sh2d1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X94,705,939 - 94,728,897 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364796,258,953 - 6,281,552 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364796,258,953 - 6,281,552 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH2D1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,824,367 - 101,849,671 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,824,602 - 101,847,265 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,692,706 - 116,715,387 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SH2D1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606537,084,938 - 37,111,292 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh2d1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247973,120,123 - 3,142,564 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247973,120,123 - 3,142,564 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008976722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000056255   ⟹   ENSPPAP00000033380
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX123,712,932 - 123,739,419 (+)Ensembl
RefSeq Acc Id: XM_008976722   ⟹   XP_008974970
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X123,819,657 - 123,846,697 (+)NCBI
NHGRI_mPanPan1X123,823,266 - 123,850,307 (+)NCBI
Mhudiblu_PPA_v0X113,538,321 - 113,565,468 (+)NCBI
PanPan1.1X123,712,932 - 123,739,419 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008974970 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033380
  ENSPPAP00000033380.1
RefSeq Acc Id: XP_008974970   ⟸   XM_008976722
- UniProtKB: A0A2R9BY26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000033380   ⟸   ENSPPAT00000056255
Protein Domains
SH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056255.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/TrEMBL
InterPro SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SH2_prot_1A UniProtKB/TrEMBL
  SH2D1A_SH2 UniProtKB/TrEMBL
KEGG Report pps:100991532 UniProtKB/TrEMBL
NCBI Gene SH2D1A ENTREZGENE
PANTHER IPPC DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SH2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam SH2 UniProtKB/TrEMBL
PIRSF SH2_p1A UniProtKB/TrEMBL
PRINTS SH2DOMAIN UniProtKB/TrEMBL
PROSITE SH2 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55550 UniProtKB/TrEMBL
UniProt A0A2R9BY26 ENTREZGENE, UniProtKB/TrEMBL