SPATA2 (spermatogenesis associated 2) - Rat Genome Database

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Gene: SPATA2 (spermatogenesis associated 2) Pan paniscus
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Symbol: SPATA2
Name: spermatogenesis associated 2
RGD ID: 11777549
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); signaling receptor complex adaptor activity (inferred); ubiquitin-specific protease binding (inferred); INVOLVED IN necroptotic process (ortholog); seminiferous tubule development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); fibrillar center (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,649,232 - 55,662,902 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12055,643,744 - 55,655,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02046,245,560 - 46,257,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12047,307,731 - 47,320,315 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,307,731 - 47,320,343 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SPATA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,649,232 - 55,662,902 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12055,643,744 - 55,655,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02046,245,560 - 46,257,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12047,307,731 - 47,320,315 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,307,731 - 47,320,343 (-)Ensemblpanpan1.1panPan2
SPATA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,903,391 - 49,915,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2049,903,391 - 49,915,529 (-)EnsemblGRCh38hg38GRCh38
GRCh372048,519,928 - 48,532,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,953,335 - 47,965,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 342047,953,337 - 47,965,475NCBI
Celera2045,224,519 - 45,236,653 (-)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2045,269,043 - 45,281,171 (-)NCBIHuRef
CHM1_12048,424,471 - 48,436,626 (-)NCBICHM1_1
T2T-CHM13v2.02051,672,830 - 51,685,863 (-)NCBIT2T-CHM13v2.0
Spata2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,323,053 - 167,334,804 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2167,323,053 - 167,334,807 (-)EnsemblGRCm39 Ensembl
GRCm382167,481,136 - 167,493,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,481,133 - 167,492,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv372167,306,636 - 167,318,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362167,172,600 - 167,184,068 (-)NCBIMGSCv36mm8
Celera2173,423,092 - 173,434,830 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map287.23NCBI
Spata2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,621,974 - 176,639,784 (-)NCBIGRCr8
mRatBN7.23156,202,962 - 156,213,283 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3156,202,967 - 156,211,705 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3159,999,560 - 160,007,957 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03168,498,614 - 168,507,011 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03166,240,308 - 166,248,705 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03164,229,211 - 164,239,483 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,230,852 - 164,239,250 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,379,958 - 170,390,225 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,632,425 - 158,640,824 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13158,538,461 - 158,546,860 (-)NCBI
Celera3154,784,243 - 154,792,642 (-)NCBICelera
Cytogenetic Map3q42NCBI
Spata2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,281,545 - 8,292,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,281,280 - 8,292,951 (+)NCBIChiLan1.0ChiLan1.0
SPATA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,443,856 - 36,454,264 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,445,870 - 36,448,585 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,685,192 - 35,695,734 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,147,635 - 37,158,176 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,147,642 - 37,158,050 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,389,022 - 36,399,560 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,522,317 - 36,532,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,065,662 - 37,076,202 (-)NCBIUU_Cfam_GSD_1.0
Spata2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,052,342 - 189,059,401 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365144,508,837 - 4,513,264 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365144,506,015 - 4,513,040 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,489,701 - 51,500,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,489,696 - 51,500,900 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPATA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,074,761 - 14,087,322 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,075,621 - 14,087,350 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605062,554,506 - 62,566,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247905,553,082 - 5,572,250 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000032202   ⟹   ENSPPAP00000009559
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2047,307,731 - 47,320,343 (-)Ensembl
RefSeq Acc Id: XM_003809257   ⟹   XP_003809305
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22155,649,232 - 55,662,902 (-)NCBI
NHGRI_mPanPan12055,643,744 - 55,655,402 (-)NCBI
Mhudiblu_PPA_v02046,245,560 - 46,257,656 (-)NCBI
PanPan1.12047,307,731 - 47,320,315 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034946901   ⟹   XP_034802792
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22155,649,232 - 55,661,072 (-)NCBI
NHGRI_mPanPan12055,643,744 - 55,653,372 (-)NCBI
Mhudiblu_PPA_v02046,245,560 - 46,256,593 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003809305 (Get FASTA)   NCBI Sequence Viewer  
  XP_034802792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009559
  ENSPPAP00000009559.1
RefSeq Acc Id: XP_003809305   ⟸   XM_003809257
- UniProtKB: A0A2R9A2Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034802792   ⟸   XM_034946901
- UniProtKB: A0A2R9A2Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000009559   ⟸   ENSPPAT00000032202

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028008 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032202.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2190 UniProtKB/TrEMBL
InterPro SPATA2_PUB-like UniProtKB/TrEMBL
KEGG Report pps:100980698 UniProtKB/TrEMBL
NCBI Gene SPATA2 ENTREZGENE
PANTHER PTHR15326:SF8 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC UniProtKB/TrEMBL
Pfam SPATA2_PUB-like UniProtKB/TrEMBL
UniProt A0A2R9A2Q9 ENTREZGENE, UniProtKB/TrEMBL