LOC100975788 (olfactory receptor 2A1/2A42) - Rat Genome Database

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Pathways
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Gene: LOC100975788 (olfactory receptor 2A1/2A42) Pan paniscus
Analyze
Symbol: LOC100975788
Name: olfactory receptor 2A1/2A42
RGD ID: 11777338
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,888,196 - 180,896,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,894,704 - 32,906,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07136,032,666 - 136,033,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17148,521,844 - 148,522,867 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100975788
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,888,196 - 180,896,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,894,704 - 32,906,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07136,032,666 - 136,033,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17148,521,844 - 148,522,867 (+)NCBIpanpan1.1PanPan1.1panPan2
OR2A42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387144,228,244 - 144,239,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7144,228,244 - 144,239,605 (-)EnsemblGRCh38hg38GRCh38
GRCh377143,925,337 - 143,936,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367143,559,937 - 143,560,851 (-)NCBINCBI36Build 36hg18NCBI36
Build 347143,452,883 - 143,453,798NCBI
Cytogenetic Map7q35NCBI
HuRef7138,116,573 - 138,117,505 (+)NCBIHuRef
CHM1_17143,866,391 - 143,867,323 (-)NCBICHM1_1
CRA_TCAGchr7v27143,267,262 - 143,268,194 (-)NCBI
OR2A9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1165,691,684 - 5,693,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl165,692,476 - 5,693,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha166,804,404 - 6,805,345 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0165,556,903 - 5,557,844 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,556,912 - 5,557,844 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1165,486,185 - 5,487,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0165,344,603 - 5,345,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,415,765 - 5,416,706 (-)NCBIUU_Cfam_GSD_1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057302778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_057302778   ⟹   XP_057158761
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26180,888,196 - 180,896,779 (+)NCBI
NHGRI_mPanPan1732,894,704 - 32,906,992 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057158761 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002056.1
Reference Protein Sequences
RefSeq Acc Id: XP_057158761   ⟸   XM_057302778
- UniProtKB: A0A2R8ZHA5 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000009373 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000010105.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report pps:100975788 UniProtKB/TrEMBL
NCBI Gene LOC100975788 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R8ZHA5 ENTREZGENE, UniProtKB/TrEMBL