UIMC1 (ubiquitin interaction motif containing 1)

Gene: UIMC1 (ubiquitin interaction motif containing 1) Pan paniscus

Analyze

Symbol:

UIMC1

Name:

ubiquitin interaction motif containing 1

RGD ID:

11775849

Description:

ENCODES a protein that exhibits nuclear retinoid X receptor binding (ortholog); INVOLVED IN chromatin organization (inferred); DNA repair (inferred); DNA repair-dependent chromatin remodeling (inferred); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN site of double-strand break (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BRCA1-A complex subunit RAP80

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,988,343 - 172,104,166 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,127,854 - 170,243,705 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,205,958 - 172,321,758 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,272,208 - 179,390,215 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,271,577 - 179,374,229 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 5, Trisomy 5q (ISO)

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Sotos syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

DNA repair (IEA)

DNA repair-dependent chromatin remodeling (IEA)

double-strand break repair (IEA)

mitotic G2 DNA damage checkpoint signaling (IEA)

negative regulation of DNA-templated transcription (IEA)

positive regulation of DNA repair (IEA)

response to ionizing radiation (IEA)

Cellular Component

BRCA1-A complex (IEA)

nuclear body (IEA)

nucleoplasm (IEA)

nucleus (IEA)

site of double-strand break (IEA,ISO)

Molecular Function

DNA binding (IEA)

histone binding (IEA)

K63-linked polyubiquitin modification-dependent protein binding (IEA)

metal ion binding (IEA)

nuclear retinoid X receptor binding (ISO)

protein binding (ISO)

ubiquitin-modified histone reader activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

UIMC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,988,343 - 172,104,166 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	170,127,854 - 170,243,705 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	172,205,958 - 172,321,758 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	179,272,208 - 179,390,215 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	179,271,577 - 179,374,229 (-)	Ensembl	panpan1.1		panPan2

UIMC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	176,905,005 - 177,022,602 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	176,905,005 - 177,022,633 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	176,332,006 - 176,433,795 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	176,264,612 - 176,366,049 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	172,067,890 - 172,170,216 (+)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	171,254,718 - 171,355,942 (-)	NCBI		HuRef
CHM1_1	5	175,764,210 - 175,866,189 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	177,450,819 - 177,566,146 (-)	NCBI		T2T-CHM13v2.0

Uimc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	55,175,693 - 55,248,176 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	55,175,693 - 55,248,113 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	55,027,880 - 55,100,363 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	55,027,880 - 55,100,300 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	55,129,241 - 55,201,656 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	55,037,502 - 55,109,917 (-)	NCBI		MGSCv36	mm8
Celera	13	56,088,803 - 56,161,302 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	29.8	NCBI

Uimc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,528,923 - 9,597,967 (+)	NCBI		GRCr8
mRatBN7.2	17	9,523,793 - 9,592,810 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,527,794 - 9,592,799 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	9,545,179 - 9,610,171 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,074,182 - 11,139,282 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,541,582 - 9,606,574 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,061,915 - 10,130,921 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,065,947 - 10,130,907 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	12,169,049 - 12,239,764 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,579,709 - 15,644,888 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	15,579,708 - 15,644,885 (+)	NCBI
Celera	17	9,605,684 - 9,670,784 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Uimc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	29,154,629 - 29,274,856 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	29,154,373 - 29,274,817 (-)	NCBI	ChiLan1.0	ChiLan1.0

UIMC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,339,711 - 36,467,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,354,922 - 36,466,880 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,306,323 - 36,433,335 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	36,704,960 - 36,832,383 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	36,705,034 - 36,832,347 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	36,531,498 - 36,658,474 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	36,719,094 - 36,846,322 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,226,943 - 37,354,416 (+)	NCBI		UU_Cfam_GSD_1.0

Uimc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	122,118,891 - 122,235,431 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936597	1,143,835 - 1,260,339 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UIMC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,929,267 - 81,036,448 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,895,631 - 81,040,712 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	82,633,416 - 82,643,935 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	2	82,469,138 - 82,571,850 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UIMC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	78,912,434 - 79,010,695 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	78,911,234 - 79,010,264 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	10,074,575 - 10,173,415 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uimc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	13,096,286 - 13,242,372 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	13,096,572 - 13,240,685 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003806848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003806849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008958147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014345165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055113044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063604302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063604303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000048340 ⟹ ENSPPAP00000025513

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,271,577 - 179,349,850 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048348 ⟹ ENSPPAP00000025521

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,272,208 - 179,374,229 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048354 ⟹ ENSPPAP00000025527

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,272,457 - 179,349,842 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000048357 ⟹ ENSPPAP00000025529

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	5	179,272,457 - 179,335,401 (-)	Ensembl

RefSeq Acc Id:

XM_003806848 ⟹ XP_003806896

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,087,488 (-)	NCBI
NHGRI_mPanPan1	5	170,127,854 - 170,227,025 (-)	NCBI
Mhudiblu_PPA_v0	5	172,205,975 - 172,305,124 (-)	NCBI
PanPan1.1	5	179,272,208 - 179,374,244 (-)	NCBI

Sequence:

show sequence

CGCGCCTGCGCCCGCCCCGAGAGCGTGTCTCTGGCATCGGACGCGCGCGCCCGTCCCCTTCCCC
CCGCGCTCCCAACGTGTGGCGGCTCGCGACCCCCGGCAACCCGGAGAAGGGCTACAGAGCGGCC
CGCGCCAGCGAACAAAAGGATGCCACGGAGAAAGAAAAAAGTTAAAGAAGTCTCCGAATCTCGG
AACCTGGAGAAGAAGGATGTGGAAACTACCAGTTCTGTCGGTGTGAAGAGGAAGCGTAGACTTG
AGGATGCATTCATTGTGATATCCGATAGTGATGGAGAGGAACCAAAGGAGGAAAATGGATTGCA
GAAAACGAAGACAAAACAGTCGAATAGAGCAAAGTGTTTGGCCAAAAGAAAAATTGCACAGATG
ACAGAAGAAGAACAGTTTGCTCTGGCTCTCAAAATGAGTGAGCAGGAAGCTAGGGAGGTGAACA
GCCAGGAGGAGGAAGAAGAGGAGCTCTTGAGGAAAGCCATTGCTGAAAGCCTGAATAGTTGCCG
GCCTTCTGATGCTTCCGCTACCAGATCTCGACCTCTGGCCACTGGACCGTCTTCCCAGTCCCAC
CAAGAGAAAACCACAGACTCTGGGCTCACTGAAGGCATATGGCAGCTGGTACCTCCATCACTGT
TTAAAGGCTCACATATCAGTCAGGGAAACGAGGCTGAGGAAAGAGAGGAGCCTTGGGACCACAC
TGAAAAAACTGAAGAGGAGCCGGTCTCTGGCAGCTCAGGAAGCTGGGACCAGTCAAGCCAGCCA
GTGTTTGAGAATGTGAACGTTAAATCTTTTGACAGATGTACTGGCCACTTGGCTGAGCACACAC
AGTGTGGGAAGCCACAGGAAAGTACTGGGAGGGGTTCTGCTTTTCTCAAAGCTGTCCAGGGTAG
CGGGGACACATCTAGGCACTGTCTACCTACCCTAGCAGATGCCAAAGGTCTCCAGGACACTGGG
GGCACTGTGAACTACTTCTGGGGTATTCCATTCTGCCCTGATGGAGTAGACCCTAACCAGTATA
CCAAGGTCATTCTCTGCCAGTTGGAGGTTTATCAAAAGAGCCTGAAAATGGCTCAGAGGCAGCT
CCTAAAAAAAAAAGGTTTTGGGGAACCAGTGTTACCTAGACCTCCTTCTCTGATCCAGAATGAA
TGTGGCCAAGGAGAGCAGGCTAGTGAAAAAAATGAATGCATCTCAGAAGATATGGGAGATGAAG
ACAAAGAGGAGAGGCAGGAGTCTAGGGCATCTGACTGGCACTCAAAAACCAAGGATTTCCAGGA
AAGCTCAATTAAAAGCTTGAAAGAGAAACTTTTGTTGGAGGAAGAACCAACAACCAGTCATGGT
CAGTCTTCCCAAGGGATTGTTGAAGAAACTTCTGAAGAGGGAAACTCTGTACCTGCTTCACAAA
GTGTTGCTGCTTTGACCAGTAAGGGAAGCTTAGTCCTTATGCCAGAGAGTTCTACAGAAGAAAT
CACTGTTTGTCCTGAGACACAGCTAAGTTCCTCTGAAACTTTTGACCTTGAAAGAGAAGTCTCT
CCGGGTAGCAGAGAGATCTTGGATGGAGTCAGAATAATAATGGCAGATAAGGAGGTTGGTAACA
AGGAAGATGCTGAGAAGGAAATAGCTATTTCTACCTTCTCATCCAGTAACCAGGTATCCTGCCC
GCTATGTGACCAACACTTTCCACCCACAAAGATTGAACGACATGCCATGTACTGCAATGGTCTG
ATGGAGGAAGATACAGTATTGACTCGGAGACAAAAAGAGGCCAAGGCCAAGACCAAGAGTGACA
GTGGAACAGCTGCCCAGACTTCTCTAGACATTGACAAGAATGAGAAGTGTTACCTCTGTAAATC
CCTGGTCCCATTTAGAGAGTATCAGTGTCATGTGGACTCCTGTCTCCAGCTTGCAAAGGCTGAC
CAAGGAGATGGACCTGAAGGGGGTGGAAGAGCATTTTCAACTGTGGAGGGGAAGTGGCAGCAGA
GGCTGAAGAACCCAAAGGAAAAAGGCCACAGTGAAGGCCGACTCCTTAGTTTCTTGGAACAGTC
TGAGCACAAGACTTCAGATGCAGACATCAAGTCTTCAGAAACAGGAGCCTTCAGGGTGCCTTCA
CCAGGGATGGAAGAGGCAGGCTGCAGCAGAGAGATGCAGAGTTCTTTCACACGTCGTGACTTAA
ATGAATCTCCCGTCAAGTCTTTTGTTTCCATTTCAGAAGCCACAGATTGCTTAGTGGACTTTAA
AAAGCAAGTTACTGTCCAGCCAGGTAGTCGGACACGGACCAAAGCTGGCAGAGGAAGAAGGAGA
AAATTCTGAATTTCTAGGGTCCAAAAGTTGGCAAAACCATTAGTAGGAGGGGTGGGCCATGTTC
ATTAAGCCATAGTGGTCCCTAGTTCATTGTTGAGCAAGTTTTAGCCCTGCAGTTTTCACCACCA
GCACCCACTCAGCATTCTGGTTTTTATGTTTTTTATGATCTATGCAGACAACTGTGTATTCTGT
TTTATAACAGTTTGTTTGAATTTACTTACAGTTAAAAAATTTAAATATATTTATGTTTGTACGA
AA

hide sequence

RefSeq Acc Id:

XM_008958133 ⟹ XP_008956381

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,104,166 (-)	NCBI
NHGRI_mPanPan1	5	170,127,854 - 170,243,705 (-)	NCBI
Mhudiblu_PPA_v0	5	172,205,975 - 172,299,851 (-)	NCBI
PanPan1.1	5	179,272,212 - 179,368,981 (-)	NCBI

Sequence:

show sequence

GTTGAAGAAAAAAAAACAACAACCTAGGATCAGTTTGGGGAGAATTGATATGTTTACTGTGTTG
AAGCTTCCAACCCGTTGGCATGACAAAAGGATGCCACGGAGAAAGAAAAAAGTTAAAGAAGTCT
CCGAATCTCGGAACCTGGAGAAGAAGGATGTGGAAACTACCAGTTCTGTCGGTGTGAAGAGGAA
GCGTAGACTTGAGGATGCATTCATTGTGATATCCGATAGTGATGGAGAGGAACCAAAGGAGGAA
AATGGATTGCAGAAAACGAAGACAAAACAGTCGAATAGAGCAAAGTGTTTGGCCAAAAGAAAAA
TTGCACAGATGACAGAAGAAGAACAGTTTGCTCTGGCTCTCAAAATGAGTGAGCAGGAAGCTAG
GGAGGTGAACAGCCAGGAGGAGGAAGAAGAGGAGCTCTTGAGGAAAGCCATTGCTGAAAGCCTG
AATAGTTGCCGGCCTTCTGATGCTTCCGCTACCAGATCTCGACCTCTGGCCACTGGACCGTCTT
CCCAGTCCCACCAAGAGAAAACCACAGACTCTGGGCTCACTGAAGGCATATGGCAGCTGGTACC
TCCATCACTGTTTAAAGGCTCACATATCAGTCAGGGAAACGAGGCTGAGGAAAGAGAGGAGCCT
TGGGACCACACTGAAAAAACTGAAGAGGAGCCGGTCTCTGGCAGCTCAGGAAGCTGGGACCAGT
CAAGCCAGCCAGTGTTTGAGAATGTGAACGTTAAATCTTTTGACAGATGTACTGGCCACTTGGC
TGAGCACACACAGTGTGGGAAGCCACAGGAAAGTACTGGGAGGGGTTCTGCTTTTCTCAAAGCT
GTCCAGGGTAGCGGGGACACATCTAGGCACTGTCTACCTACCCTAGCAGATGCCAAAGGTCTCC
AGGACACTGGGGGCACTGTGAACTACTTCTGGGGTATTCCATTCTGCCCTGATGGAGTAGACCC
TAACCAGTATACCAAGGTCATTCTCTGCCAGTTGGAGGTTTATCAAAAGAGCCTGAAAATGGCT
CAGAGGCAGCTCCTAAAAAAAAAAGGTTTTGGGGAACCAGTGTTACCTAGACCTCCTTCTCTGA
TCCAGAATGAATGTGGCCAAGGAGAGCAGGCTAGTGAAAAAAATGAATGCATCTCAGAAGATAT
GGGAGATGAAGACAAAGAGGAGAGGCAGGAGTCTAGGGCATCTGACTGGCACTCAAAAACCAAG
GATTTCCAGGAAAGCTCAATTAAAAGCTTGAAAGAGAAACTTTTGTTGGAGGAAGAACCAACAA
CCAGTCATGGTCAGTCTTCCCAAGGGATTGTTGAAGAAACTTCTGAAGAGGGAAACTCTGTACC
TGCTTCACAAAGTGTTGCTGCTTTGACCAGTAAGGGAAGCTTAGTCCTTATGCCAGAGAGTTCT
ACAGAAGAAATCACTGTTTGTCCTGAGACACAGCTAAGTTCCTCTGAAACTTTTGACCTTGAAA
GAGAAGTCTCTCCGGGTAGCAGAGAGATCTTGGATGGAGTCAGAATAATAATGGCAGATAAGGA
GGTTGGTAACAAGGAAGATGCTGAGAAGGAAATAGCTATTTCTACCTTCTCATCCAGTAACCAG
GTATCCTGCCCGCTATGTGACCAACACTTTCCACCCACAAAGATTGAACGACATGCCATGTACT
GCAATGGTCTGATGGAGGAAGATACAGTATTGACTCGGAGACAAAAAGAGGCCAAGGCCAAGAC
CAAGAGTGACAGTGGAACAGCTGCCCAGACTTCTCTAGACATTGACAAGAATGAGAAGTGTTAC
CTCTGTAAATCCCTGGTCCCATTTAGAGAGTATCAGTGTCATGTGGACTCCTGTCTCCAGCTTG
CAAAGGCTGACCAAGGAGATGGACCTGAAGGGGGTGGAAGAGCATTTTCAACTGTGGAGGGGAA
GTGGCAGCAGAGGCTGAAGAACCCAAAGGAAAAAGGCCACAGTGAAGGCCGACTCCTTAGTTTC
TTGGAACAGTCTGAGCACAAGACTTCAGATGCAGACATCAAGTCTTCAGAAACAGGAGCCTTCA
GGGTGCCTTCACCAGGGATGGAAGAGGCAGGCTGCAGCAGAGAGATGCAGAGTTCTTTCACACG
TCGTGACTTAAATGAATCTCCCGTCAAGTCTTTTGTTTCCATTTCAGAAGCCACAGATTGCTTA
GTGGACTTTAAAAAGCAAGTTACTGTCCAGCCAGGTAGTCGGACACGGACCAAAGCTGGCAGAG
GAAGAAGGAGAAAATTCTGAATTTCTAGGGTCCAAAAGTTGGCAAAACCATTAGTAGGAGGGGT
GGGCCATGTTCATTAAGCCATAGTGGTCCCTAGTTCATTGTTGAGCAAGTTTTAGCCCTGCAGT
TTTCACCACCAGCACCCACTCAGCATTCTGGTTTTTATGTTTTTTATGATCTATGCAGACAACT
GTGTATTCTGTTTTATAACAGTTTGTTTGAATTTACTTACAGTTAAAAAATTTAAATATATTTA
TGTTTGTAC

hide sequence

RefSeq Acc Id:

XM_008958136 ⟹ XP_008956384

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,087,482 (-)	NCBI
NHGRI_mPanPan1	5	170,127,854 - 170,227,021 (-)	NCBI
Mhudiblu_PPA_v0	5	172,205,975 - 172,305,015 (-)	NCBI
PanPan1.1	5	179,272,212 - 179,374,229 (-)	NCBI

Sequence:

show sequence

CCCGAGAGCGTGTCTCTGGCATCGGACGCGCGCGCCCGTCCCCTTCCCCCCGCGCTCCCAACGT
GTGGCGGCTCGCGACCCCCGGCAACCCGGAGAAGGGCTACAGAGCGGCCCGCGCCAGCGAGTGA
GTACCCGCCGCCTGCGCACAGCTCCGCCCGCCCCTCCCTGCCTCCTTTTCTTCCTCAGCGGGTC
CGCGGCCCGCTACTCTCCGGGAGGGACGCTTCCCGACGCCAAGACAAAAGGATGCCACGGAGAA
AGAAAAAAGTTAAAGAAGTCTCCGAATCTCGGAACCTGGAGAAGAAGGATGTGGAAACTACCAG
TTCTGTCGGTGTGAAGAGGAAGCGTAGACTTGAGGATGCATTCATTGTGATATCCGATAGTGAT
GGAGAGGAACCAAAGGAGGAAAATGGATTGCAGAAAACGAAGACAAAACAGTCGAATAGAGCAA
AGTGTTTGGCCAAAAGAAAAATTGCACAGATGACAGAAGAAGAACAGTTTGCTCTGGCTCTCAA
AATGAGTGAGCAGGAAGCTAGGGAGGTGAACAGCCAGGAGGAGGAAGAAGAGGAGCTCTTGAGG
AAAGCCATTGCTGAAAGCCTGAATAGTTGCCGGCCTTCTGATGCTTCCGCTACCAGATCTCGAC
CTCTGGCCACTGGACCGTCTTCCCAGTCCCACCAAGAGAAAACCACAGACTCTGGGCTCACTGA
AGGCATATGGCAGCTGGTACCTCCATCACTGTTTAAAGGCTCACATATCAGTCAGGGAAACGAG
GCTGAGGAAAGAGAGGAGCCTTGGGACCACACTGAAAAAACTGAAGAGGAGCCGGTCTCTGGCA
GCTCAGGAAGCTGGGACCAGTCAAGCCAGCCAGTGTTTGAGAATGTGAACGTTAAATCTTTTGA
CAGATGTACTGGCCACTTGGCTGAGCACACACAGTGTGGGAAGCCACAGGAAAGTACTGGGAGG
GGTTCTGCTTTTCTCAAAGCTGTCCAGGGTAGCGGGGACACATCTAGGCACTGTCTACCTACCC
TAGCAGATGCCAAAGGTCTCCAGGACACTGGGGGCACTGTGAACTACTTCTGGGGTATTCCATT
CTGCCCTGATGGAGTAGACCCTAACCAGTATACCAAGGTCATTCTCTGCCAGTTGGAGGTTTAT
CAAAAGAGCCTGAAAATGGCTCAGAGGCAGCTCCTAAAAAAAAAAGGTTTTGGGGAACCAGTGT
TACCTAGACCTCCTTCTCTGATCCAGAATGAATGTGGCCAAGGAGAGCAGGCTAGTGAAAAAAA
TGAATGCATCTCAGAAGATATGGGAGATGAAGACAAAGAGGAGAGGCAGGAGTCTAGGGCATCT
GACTGGCACTCAAAAACCAAGGATTTCCAGGAAAGCTCAATTAAAAGCTTGAAAGAGAAACTTT
TGTTGGAGGAAGAACCAACAACCAGTCATGGTCAGTCTTCCCAAGGGATTGTTGAAGAAACTTC
TGAAGAGGGAAACTCTGTACCTGCTTCACAAAGTGTTGCTGCTTTGACCAGTAAGGGAAGCTTA
GTCCTTATGCCAGAGAGTTCTACAGAAGAAATCACTGTTTGTCCTGAGACACAGCTAAGTTCCT
CTGAAACTTTTGACCTTGAAAGAGAAGTCTCTCCGGGTAGCAGAGAGATCTTGGATGGAGTCAG
AATAATAATGGCAGATAAGGAGGTTGGTAACAAGGAAGATGCTGAGAAGGAAATAGCTATTTCT
ACCTTCTCATCCAGTAACCAGGTATCCTGCCCGCTATGTGACCAACACTTTCCACCCACAAAGA
TTGAACGACATGCCATGTACTGCAATGGTCTGATGGAGGAAGATACAGTATTGACTCGGAGACA
AAAAGAGGCCAAGGCCAAGACCAAGAGTGACAGTGGAACAGCTGCCCAGACTTCTCTAGACATT
GACAAGAATGAGAAGTGTTACCTCTGTAAATCCCTGGTCCCATTTAGAGAGTATCAGTGTCATG
TGGACTCCTGTCTCCAGCTTGCAAAGGCTGACCAAGGAGATGGACCTGAAGGGGGTGGAAGAGC
ATTTTCAACTGTGGAGGGGAAGTGGCAGCAGAGGCTGAAGAACCCAAAGGAAAAAGGCCACAGT
GAAGGCCGACTCCTTAGTTTCTTGGAACAGTCTGAGCACAAGACTTCAGATGCAGACATCAAGT
CTTCAGAAACAGGAGCCTTCAGGGTGCCTTCACCAGGGATGGAAGAGGCAGGCTGCAGCAGAGA
GATGCAGAGTTCTTTCACACGTCGTGACTTAAATGAATCTCCCGTCAAGTCTTTTGTTTCCATT
TCAGAAGCCACAGATTGCTTAGTGGACTTTAAAAAGCAAGTTACTGTCCAGCCAGGTAGTCGGA
CACGGACCAAAGCTGGCAGAGGAAGAAGGAGAAAATTCTGAATTTCTAGGGTCCAAAAGTTGGC
AAAACCATTAGTAGGAGGGGTGGGCCATGTTCATTAAGCCATAGTGGTCCCTAGTTCATTGTTG
AGCAAGTTTTAGCCCTGCAGTTTTCACCACCAGCACCCACTCAGCATTCTGGTTTTTATGTTTT
TTATGATCTATGCAGACAACTGTGTATTCTGTTTTATAACAGTTTGTTTGAATTTACTTACAGT
TAAAAAATTTAAATATATTTATGTTTGTAC

hide sequence

RefSeq Acc Id:

XM_055113043 ⟹ XP_054969018

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,087,212 (-)	NCBI
NHGRI_mPanPan1	5	170,127,854 - 170,226,736 (-)	NCBI

RefSeq Acc Id:

XM_055113044 ⟹ XP_054969019

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,087,492 (-)	NCBI
NHGRI_mPanPan1	5	170,127,854 - 170,227,031 (-)	NCBI

RefSeq Acc Id:

XM_063604302 ⟹ XP_063460372

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,087,175 (-)	NCBI

RefSeq Acc Id:

XM_063604303 ⟹ XP_063460373

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	4	171,988,343 - 172,087,354 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003806896	(Get FASTA)	NCBI Sequence Viewer
	XP_008956381	(Get FASTA)	NCBI Sequence Viewer
	XP_008956384	(Get FASTA)	NCBI Sequence Viewer
	XP_054969018	(Get FASTA)	NCBI Sequence Viewer
	XP_054969019	(Get FASTA)	NCBI Sequence Viewer
	XP_063460372	(Get FASTA)	NCBI Sequence Viewer
	XP_063460373	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000025513
	ENSPPAP00000025513.1
	ENSPPAP00000025521
	ENSPPAP00000025521.1
	ENSPPAP00000025527.1
	ENSPPAP00000025529.1

RefSeq Acc Id:	XP_003806896 ⟸ XM_003806848
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9B8V8 (UniProtKB/TrEMBL), A0A2R9B7F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRRKKKVKEVSESRNLEKKDVETTSSVGVKRKRRLEDAFIVISDSDGEEPKEENGLQKTKTKQ SNRAKCLAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKAIAESLNSCRPSDASA TRSRPLATGPSSQSHQEKTTDSGLTEGIWQLVPPSLFKGSHISQGNEAEEREEPWDHTEKTEEE PVSGSSGSWDQSSQPVFENVNVKSFDRCTGHLAEHTQCGKPQESTGRGSAFLKAVQGSGDTSRH CLPTLADAKGLQDTGGTVNYFWGIPFCPDGVDPNQYTKVILCQLEVYQKSLKMAQRQLLKKKGF GEPVLPRPPSLIQNECGQGEQASEKNECISEDMGDEDKEERQESRASDWHSKTKDFQESSIKSL KEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVAALTSKGSLVLMPESSTEEITVCPET QLSSSETFDLEREVSPGSREILDGVRIIMADKEVGNKEDAEKEIAISTFSSSNQVSCPLCDQHF PPTKIERHAMYCNGLMEEDTVLTRRQKEAKAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFRE YQCHVDSCLQLAKADQGDGPEGGGRAFSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSD ADIKSSETGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQ PGSRTRTKAGRGRRRKF hide sequence

RefSeq Acc Id:	XP_008956384 ⟸ XM_008958136
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9B8V8 (UniProtKB/TrEMBL), A0A2R9B7F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRRKKKVKEVSESRNLEKKDVETTSSVGVKRKRRLEDAFIVISDSDGEEPKEENGLQKTKTKQ SNRAKCLAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKAIAESLNSCRPSDASA TRSRPLATGPSSQSHQEKTTDSGLTEGIWQLVPPSLFKGSHISQGNEAEEREEPWDHTEKTEEE PVSGSSGSWDQSSQPVFENVNVKSFDRCTGHLAEHTQCGKPQESTGRGSAFLKAVQGSGDTSRH CLPTLADAKGLQDTGGTVNYFWGIPFCPDGVDPNQYTKVILCQLEVYQKSLKMAQRQLLKKKGF GEPVLPRPPSLIQNECGQGEQASEKNECISEDMGDEDKEERQESRASDWHSKTKDFQESSIKSL KEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVAALTSKGSLVLMPESSTEEITVCPET QLSSSETFDLEREVSPGSREILDGVRIIMADKEVGNKEDAEKEIAISTFSSSNQVSCPLCDQHF PPTKIERHAMYCNGLMEEDTVLTRRQKEAKAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFRE YQCHVDSCLQLAKADQGDGPEGGGRAFSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSD ADIKSSETGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQ PGSRTRTKAGRGRRRKF hide sequence

RefSeq Acc Id:	XP_008956381 ⟸ XM_008958133
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9B7F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFTVLKLPTRWHDKRMPRRKKKVKEVSESRNLEKKDVETTSSVGVKRKRRLEDAFIVISDSDGE EPKEENGLQKTKTKQSNRAKCLAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKA IAESLNSCRPSDASATRSRPLATGPSSQSHQEKTTDSGLTEGIWQLVPPSLFKGSHISQGNEAE EREEPWDHTEKTEEEPVSGSSGSWDQSSQPVFENVNVKSFDRCTGHLAEHTQCGKPQESTGRGS AFLKAVQGSGDTSRHCLPTLADAKGLQDTGGTVNYFWGIPFCPDGVDPNQYTKVILCQLEVYQK SLKMAQRQLLKKKGFGEPVLPRPPSLIQNECGQGEQASEKNECISEDMGDEDKEERQESRASDW HSKTKDFQESSIKSLKEKLLLEEEPTTSHGQSSQGIVEETSEEGNSVPASQSVAALTSKGSLVL MPESSTEEITVCPETQLSSSETFDLEREVSPGSREILDGVRIIMADKEVGNKEDAEKEIAISTF SSSNQVSCPLCDQHFPPTKIERHAMYCNGLMEEDTVLTRRQKEAKAKTKSDSGTAAQTSLDIDK NEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGGGRAFSTVEGKWQQRLKNPKEKGHSEG RLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISE ATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF hide sequence

RefSeq Acc Id:

ENSPPAP00000025513 ⟸ ENSPPAT00000048340

RefSeq Acc Id:

ENSPPAP00000025521 ⟸ ENSPPAT00000048348

RefSeq Acc Id:

ENSPPAP00000025529 ⟸ ENSPPAT00000048357

RefSeq Acc Id:

ENSPPAP00000025527 ⟸ ENSPPAT00000048354

RefSeq Acc Id:	XP_054969019 ⟸ XM_055113044
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_054969018 ⟸ XM_055113043
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063460373 ⟸ XM_063604303
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063460372 ⟸ XM_063604302
- Peptide Label:	isoform X5

Protein Domains

UBZ4-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000035887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000048340.1	UniProtKB/TrEMBL
	ENSPPAT00000048348.1	UniProtKB/TrEMBL
	ENSPPAT00000048354.1	UniProtKB/TrEMBL
	ENSPPAT00000048357.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.1800	UniProtKB/TrEMBL
InterPro	Rad18_UBZ4	UniProtKB/TrEMBL
	RAP80	UniProtKB/TrEMBL
	RAP80_UIM	UniProtKB/TrEMBL
	UIM_dom	UniProtKB/TrEMBL
KEGG Report	pps:100990419	UniProtKB/TrEMBL
NCBI Gene	UIMC1	ENTREZGENE
PANTHER	BRCA1-A COMPLEX SUBUNIT RAP80	UniProtKB/TrEMBL
	PTHR15932	UniProtKB/TrEMBL
Pfam	RAP80_UIM	UniProtKB/TrEMBL
PROSITE	UIM	UniProtKB/TrEMBL
	ZF_UBZ4	UniProtKB/TrEMBL
SMART	UIM	UniProtKB/TrEMBL
UniProt	A0A2R9B7D8_PANPA	UniProtKB/TrEMBL
	A0A2R9B7F9	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9B8V8	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BEV1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar