B3GNT4 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4) - Rat Genome Database

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Gene: B3GNT4 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4) Pan paniscus
Analyze
Symbol: B3GNT4
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
RGD ID: 11775617
Description: ENCODES a protein that exhibits N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN poly-N-acetyllactosamine biosynthetic process (ortholog); ASSOCIATED WITH Hearing Loss (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112123,172,431 - 123,181,427 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12123,172,431 - 123,176,283 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012119,804,502 - 119,814,294 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Hearing Loss  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
B3GNT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112123,172,431 - 123,181,427 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12123,172,431 - 123,176,283 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012119,804,502 - 119,814,294 (+)NCBIMhudiblu_PPA_v0panPan3
B3GNT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12122,203,681 - 122,208,952 (+)EnsemblGRCh38hg38GRCh38
GRCh3812122,203,709 - 122,208,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712122,688,256 - 122,693,499 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,254,181 - 121,258,037 (+)NCBINCBI36hg18NCBI36
Build 3412121,213,107 - 121,216,963NCBI
Celera12122,277,574 - 122,281,430 (+)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12119,649,164 - 119,653,020 (+)NCBIHuRef
CHM1_112122,656,521 - 122,660,380 (+)NCBICHM1_1
B3gnt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,646,519 - 123,649,945 (+)NCBIGRCm39mm39
GRCm39 Ensembl5123,648,523 - 123,649,945 (+)Ensembl
GRCm385123,508,461 - 123,511,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,510,460 - 123,511,882 (+)EnsemblGRCm38mm10GRCm38
MGSCv375123,960,469 - 123,961,891 (+)NCBIGRCm37mm9NCBIm37
MGSCv365123,771,078 - 123,772,500 (+)NCBImm8
Celera5120,597,308 - 120,598,730 (+)NCBICelera
Cytogenetic Map5FNCBI
B3gnt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21233,070,221 - 33,073,904 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1233,060,416 - 33,073,854 (-)Ensembl
Rnor_6.01238,503,361 - 38,506,793 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,503,361 - 38,504,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,384,776 - 40,388,648 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,209,650 - 34,211,063 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11234,073,292 - 34,074,342 (-)NCBI
Celera1234,755,422 - 34,756,835 (-)NCBICelera
Cytogenetic Map12q16NCBI
B3gnt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554826,359,967 - 6,365,344 (-)NCBIChiLan1.0ChiLan1.0
B3GNT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,145,120 - 7,147,732 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,145,262 - 7,146,335 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,305,308 - 7,308,871 (-)NCBI
ROS_Cfam_1.0267,396,617 - 7,400,186 (-)NCBI
UMICH_Zoey_3.1267,328,767 - 7,332,313 (-)NCBI
UNSW_CanFamBas_1.0267,419,678 - 7,423,246 (-)NCBI
UU_Cfam_GSD_1.0267,375,419 - 7,378,983 (-)NCBI
B3gnt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,206,764 - 157,211,525 (+)NCBI
SpeTri2.0NW_0049365582,269,182 - 2,272,664 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,520,076 - 30,523,060 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,520,075 - 30,524,275 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,327,298 - 32,337,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,552,133 - 117,555,112 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037127,771,241 - 127,774,996 (-)NCBIVero_WHO_p1.0
B3gnt4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474722,440,284 - 22,441,539 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000055938   ⟹   ENSPPAP00000033068
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12123,172,431 - 123,176,283 (+)Ensembl
RefSeq Acc Id: XM_008957736   ⟹   XP_008955984
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112123,172,431 - 123,177,678 (+)NCBI
Mhudiblu_PPA_v012119,804,502 - 119,808,853 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034934699   ⟹   XP_034790590
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v012119,804,630 - 119,809,888 (+)NCBI
RefSeq Acc Id: XR_609562
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112123,172,442 - 123,181,427 (+)NCBI
Mhudiblu_PPA_v012119,804,622 - 119,814,294 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008955984 (Get FASTA)   NCBI Sequence Viewer  
  XP_034790590 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008955984   ⟸   XM_008957736
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034790590   ⟸   XM_034934699
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000033068   ⟸   ENSPPAT00000055938


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039397 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000033068 ENTREZGENE
NCBI Gene B3GNT4 ENTREZGENE