TKT (transketolase) - Rat Genome Database

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Gene: TKT (transketolase) Pan paniscus
Analyze
Symbol: TKT
Name: transketolase
RGD ID: 11775376
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); magnesium ion binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN pentose-phosphate shunt (ortholog); pentose-phosphate shunt, non-oxidative branch (ortholog); regulation of growth (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1354,389,549 - 54,420,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl354,389,549 - 54,420,704 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0353,168,426 - 53,199,003 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
TKT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1354,389,549 - 54,420,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl354,389,549 - 54,420,704 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0353,168,426 - 53,199,003 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TKT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,224,712 - 53,256,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl353,224,712 - 53,256,052 (-)EnsemblGRCh38hg38GRCh38
GRCh37353,258,728 - 53,290,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,234,704 - 53,264,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34353,234,705 - 53,264,998NCBI
Celera353,225,747 - 53,257,192 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,308,475 - 53,339,480 (-)NCBIHuRef
CHM1_1353,210,297 - 53,241,712 (-)NCBICHM1_1
T2T-CHM13v2.0353,257,622 - 53,288,998 (-)NCBIT2T-CHM13v2.0
Tkt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,271,088 - 30,296,681 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,270,316 - 30,296,677 (+)EnsemblGRCm39 Ensembl
GRCm381430,549,131 - 30,574,724 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1430,548,359 - 30,574,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv371431,362,335 - 31,387,908 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361429,378,158 - 29,403,731 (+)NCBIMGSCv36mm8
Celera1426,805,317 - 26,830,435 (+)NCBICelera
Cytogenetic Map14BNCBI
Tkt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2165,723,764 - 5,748,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,723,762 - 5,748,698 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,735,981 - 5,760,697 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0166,881,435 - 6,906,151 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0165,734,559 - 5,759,275 (+)NCBIRnor_WKY
Rnor_6.0166,609,670 - 6,634,608 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,609,668 - 6,634,595 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,543,529 - 6,568,467 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,908,759 - 5,933,695 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,908,756 - 5,933,689 (+)NCBI
Celera169,440,328 - 9,465,209 (-)NCBICelera
Cytogenetic Map16p16NCBI
Tkt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,178,830 - 3,193,345 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554303,178,830 - 3,193,241 (-)NCBIChiLan1.0ChiLan1.0
TKT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,690,540 - 36,705,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,681,531 - 36,742,199 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,617,359 - 36,642,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,959,138 - 36,984,142 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,958,981 - 36,984,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,395,903 - 36,420,888 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,757,580 - 36,782,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,972,262 - 36,997,252 (+)NCBIUU_Cfam_GSD_1.0
Tkt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,812,273 - 170,840,216 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364733,950,846 - 3,978,778 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TKT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,348,915 - 35,377,587 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,348,921 - 35,377,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21338,418,457 - 38,447,124 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TKT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12214,620,340 - 14,650,694 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2214,620,287 - 14,650,655 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041152,245,198 - 152,275,549 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tkt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248223,989,299 - 4,014,269 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248223,989,292 - 4,014,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003818734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000042062   ⟹   ENSPPAP00000019304
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl354,389,549 - 54,420,704 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000042072   ⟹   ENSPPAP00000019313
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl354,389,657 - 54,420,533 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000042073   ⟹   ENSPPAP00000019314
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl354,392,957 - 54,420,533 (-)Ensembl
RefSeq Acc Id: XM_003818734   ⟹   XP_003818782
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1354,389,549 - 54,420,704 (-)NCBI
Mhudiblu_PPA_v0353,168,426 - 53,199,003 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003818782 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003818782   ⟸   XM_003818734
- UniProtKB: A0A2R9AWF4 (UniProtKB/TrEMBL),   A0A6D2XUB3 (UniProtKB/TrEMBL),   H2R886 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000019304   ⟸   ENSPPAT00000042062
RefSeq Acc Id: ENSPPAP00000019314   ⟸   ENSPPAT00000042073
RefSeq Acc Id: ENSPPAP00000019313   ⟸   ENSPPAT00000042072
Protein Domains
TRANSKETOLASE_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000019304 ENTREZGENE
  ENSPPAP00000019304.1 UniProtKB/TrEMBL
  ENSPPAP00000019313.1 UniProtKB/TrEMBL
  ENSPPAP00000019314.1 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042062.1 UniProtKB/TrEMBL
  ENSPPAT00000042072.1 UniProtKB/TrEMBL
  ENSPPAT00000042073.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.920 UniProtKB/TrEMBL
InterPro THDP-binding UniProtKB/TrEMBL
  Transketo_C/PFOR_II UniProtKB/TrEMBL
  Transketolase-like_Pyr-bd UniProtKB/TrEMBL
  Transketolase_BS UniProtKB/TrEMBL
  Transketolase_C UniProtKB/TrEMBL
  Transketolase_N UniProtKB/TrEMBL
KEGG Report pps:100976799 UniProtKB/TrEMBL
NCBI Gene TKT ENTREZGENE
Pfam Transket_pyr UniProtKB/TrEMBL
  Transketolase_C UniProtKB/TrEMBL
  Transketolase_N UniProtKB/TrEMBL
PROSITE TRANSKETOLASE_1 UniProtKB/TrEMBL
  TRANSKETOLASE_2 UniProtKB/TrEMBL
SMART Transket_pyr UniProtKB/TrEMBL
Superfamily-SCOP SSF52518 UniProtKB/TrEMBL
  SSF52922 UniProtKB/TrEMBL
UniProt A0A2R9AQ71_PANPA UniProtKB/TrEMBL
  A0A2R9AWF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AWG5_PANPA UniProtKB/TrEMBL
  A0A6D2XUB3 ENTREZGENE
  H2R886 ENTREZGENE