TNFRSF21 (TNF receptor superfamily member 21) - Rat Genome Database

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Gene: TNFRSF21 (TNF receptor superfamily member 21) Pan paniscus
Analyze
Symbol: TNFRSF21
Name: TNF receptor superfamily member 21
RGD ID: 11774970
Description: INVOLVED IN axonal fasciculation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); genetic disease (ortholog); Gliosis (ortholog); FOUND IN axon (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 21
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2561,728,356 - 61,808,918 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1657,594,589 - 57,675,179 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0646,815,762 - 46,894,286 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1648,079,749 - 48,158,356 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl648,079,749 - 48,158,356 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TNFRSF21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2561,728,356 - 61,808,918 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1657,594,589 - 57,675,179 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0646,815,762 - 46,894,286 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1648,079,749 - 48,158,356 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl648,079,749 - 48,158,356 (-)Ensemblpanpan1.1panPan2
TNFRSF21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38647,231,532 - 47,309,905 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl647,231,532 - 47,309,905 (-)EnsemblGRCh38hg38GRCh38
GRCh37647,199,268 - 47,277,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36647,307,227 - 47,385,639 (-)NCBINCBI36Build 36hg18NCBI36
Build 34647,307,227 - 47,385,639NCBI
Celera648,751,647 - 48,830,057 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef646,922,187 - 47,000,607 (-)NCBIHuRef
CHM1_1647,202,168 - 47,280,589 (-)NCBICHM1_1
T2T-CHM13v2.0647,068,690 - 47,147,063 (-)NCBIT2T-CHM13v2.0
Tnfrsf21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391743,327,446 - 43,400,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1743,327,446 - 43,400,080 (+)EnsemblGRCm39 Ensembl
GRCm381743,016,555 - 43,089,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1743,016,555 - 43,089,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv371743,153,504 - 43,226,137 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361742,480,039 - 42,552,546 (+)NCBIMGSCv36mm8
Celera1746,437,745 - 46,511,566 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1719.69NCBI
Tnfrsf21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8925,376,400 - 25,451,323 (-)NCBIGRCr8
mRatBN7.2917,879,156 - 17,954,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl917,879,156 - 17,954,085 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx926,464,727 - 26,539,338 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0931,539,288 - 31,613,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0929,829,984 - 29,904,528 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0920,546,159 - 20,621,051 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,546,159 - 20,621,051 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0919,419,628 - 19,494,259 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,587,961 - 13,666,380 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1913,587,217 - 13,769,016 (-)NCBI
Celera915,587,091 - 15,661,770 (-)NCBICelera
Cytogenetic Map9q13NCBI
Tnfrsf21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,876,895 - 11,915,460 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543711,877,051 - 11,915,220 (-)NCBIChiLan1.0ChiLan1.0
TNFRSF21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11215,343,953 - 15,408,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1215,378,311 - 15,451,582 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01215,849,878 - 15,923,408 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11215,358,307 - 15,431,830 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01215,451,469 - 15,524,837 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01215,597,718 - 15,671,239 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494650,765,997 - 50,834,940 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647613,125,042 - 13,194,232 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647613,125,269 - 13,194,205 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl742,020,227 - 42,091,448 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1742,020,219 - 42,091,521 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2748,679,152 - 48,748,972 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11724,981,649 - 25,053,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1724,981,540 - 25,055,897 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604447,247,715 - 47,321,445 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475413,567,734 - 13,634,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475413,567,898 - 13,633,368 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003833192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000036255   ⟹   ENSPPAP00000013582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl648,079,749 - 48,158,356 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036259   ⟹   ENSPPAP00000013586
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl648,080,954 - 48,138,325 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036261   ⟹   ENSPPAP00000013588
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl648,080,954 - 48,137,909 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036266   ⟹   ENSPPAP00000013593
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl648,132,086 - 48,134,746 (-)Ensembl
RefSeq Acc Id: XM_003833192   ⟹   XP_003833240
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2561,728,356 - 61,808,918 (-)NCBI
NHGRI_mPanPan1657,594,589 - 57,675,179 (-)NCBI
Mhudiblu_PPA_v0646,815,762 - 46,894,286 (-)NCBI
PanPan1.1648,079,749 - 48,158,356 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003833240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013582
  ENSPPAP00000013582.1
  ENSPPAP00000013586.1
  ENSPPAP00000013588.1
  ENSPPAP00000013593.1
Reference Protein Sequences
RefSeq Acc Id: XP_003833240   ⟸   XM_003833192
- UniProtKB: A0A2R9ADT6 (UniProtKB/TrEMBL),   A0A2R9ADK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000013586   ⟸   ENSPPAT00000036259
RefSeq Acc Id: ENSPPAP00000013582   ⟸   ENSPPAT00000036255
RefSeq Acc Id: ENSPPAP00000013593   ⟸   ENSPPAT00000036266
RefSeq Acc Id: ENSPPAP00000013588   ⟸   ENSPPAT00000036261
Protein Domains
Death   TNFR-Cys


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036255.1 UniProtKB/TrEMBL
  ENSPPAT00000036259.1 UniProtKB/TrEMBL
  ENSPPAT00000036261.1 UniProtKB/TrEMBL
  ENSPPAT00000036266.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_21 UniProtKB/TrEMBL
  TNFRSF21_death UniProtKB/TrEMBL
  TNFRSF21_N UniProtKB/TrEMBL
KEGG Report pps:100992414 UniProtKB/TrEMBL
NCBI Gene TNFRSF21 ENTREZGENE
PANTHER PTHR46921 UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 21 UniProtKB/TrEMBL
Pfam Death UniProtKB/TrEMBL
  TNFR_c6 UniProtKB/TrEMBL
PRINTS TNFACTORR21 UniProtKB/TrEMBL
PROSITE DEATH_DOMAIN UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
SMART DEATH UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  TNFR UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
  TNF receptor-like UniProtKB/TrEMBL
UniProt A0A2R9A9L4_PANPA UniProtKB/TrEMBL
  A0A2R9ADK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9ADK9_PANPA UniProtKB/TrEMBL
  A0A2R9ADT6 ENTREZGENE, UniProtKB/TrEMBL