CLDN12 (claudin 12) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CLDN12 (claudin 12) Pan paniscus
Analyze
Symbol: CLDN12
Name: claudin 12
RGD ID: 11774880
Description: INVOLVED IN tight junction assembly (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell periphery (ortholog); lateral plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: claudin-12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1796,018,822 - 96,109,646 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0782,417,687 - 82,430,167 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CLDN12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1796,018,822 - 96,109,646 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0782,417,687 - 82,430,167 (+)NCBIMhudiblu_PPA_v0panPan3
CLDN12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl790,383,721 - 90,513,402 (+)EnsemblGRCh38hg38GRCh38
GRCh38790,403,461 - 90,415,954 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37790,032,775 - 90,045,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36789,870,732 - 89,883,204 (+)NCBINCBI36hg18NCBI36
Build 34789,677,446 - 89,689,917NCBI
Celera784,736,780 - 84,749,336 (+)NCBI
Cytogenetic Map7q21.13NCBI
HuRef784,641,937 - 84,654,558 (+)NCBIHuRef
CHM1_1789,962,738 - 89,975,355 (+)NCBICHM1_1
CRA_TCAGchr7v2789,363,457 - 89,376,077 (+)NCBI
Cldn12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3955,555,015 - 5,564,976 (-)NCBIGRCm39mm39
GRCm39 Ensembl55,539,537 - 5,564,958 (-)Ensembl
GRCm3855,505,015 - 5,514,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl55,489,537 - 5,514,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv3755,505,015 - 5,514,976 (-)NCBIGRCm37mm9NCBIm37
MGSCv3655,511,115 - 5,520,879 (-)NCBImm8
Celera55,452,774 - 5,463,060 (-)NCBICelera
Cytogenetic Map5A1NCBI
Cldn12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2428,522,659 - 28,533,647 (+)NCBI
Rnor_6.0 Ensembl425,686,392 - 25,692,547 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0425,681,561 - 25,692,547 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0425,588,737 - 25,599,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4425,213,105 - 25,219,260 (+)NCBIRGSC3.4rn4RGSC3.4
Celera423,972,077 - 23,978,232 (+)NCBICelera
Cytogenetic Map4q13NCBI
Cldn12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554327,632,382 - 7,640,024 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554327,632,382 - 7,640,024 (+)NCBIChiLan1.0ChiLan1.0
CLDN12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1416,293,144 - 16,293,878 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11416,286,030 - 16,296,649 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366213,643,518 - 3,652,899 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1970,499,770 - 70,510,082 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2976,998,242 - 77,008,539 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN12
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12158,517,093 - 58,530,471 (-)NCBI
ChlSab1.1 Ensembl2158,519,624 - 58,520,358 (-)Ensembl
Cldn12
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248092,845,411 - 2,854,367 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008962049   ⟹   XP_008960297
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1796,018,822 - 96,031,380 (+)NCBI
Mhudiblu_PPA_v0782,417,687 - 82,430,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014345716   ⟹   XP_014201202
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1796,018,841 - 96,031,380 (+)NCBI
Mhudiblu_PPA_v0782,417,687 - 82,430,167 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034964414   ⟹   XP_034820305
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0782,417,776 - 82,430,167 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008960297 (Get FASTA)   NCBI Sequence Viewer  
  XP_014201202 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820305 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008960297   ⟸   XM_008962049
- Sequence:
RefSeq Acc Id: XP_014201202   ⟸   XM_014345716
- Sequence:
RefSeq Acc Id: XP_034820305   ⟸   XM_034964414


Additional Information

Database Acc Id Source(s)
NCBI Gene CLDN12 ENTREZGENE