CROT (carnitine O-octanoyltransferase) - Rat Genome Database

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Gene: CROT (carnitine O-octanoyltransferase) Pan paniscus
Analyze
Symbol: CROT
Name: carnitine O-octanoyltransferase
RGD ID: 11774588
Description: ENCODES a protein that exhibits carnitine O-octanoyltransferase activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); coenzyme A metabolic process (ortholog); fatty acid beta-oxidation (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Left Ventricular Hypertrophy (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: peroxisomal carnitine O-octanoyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1792,989,868 - 93,043,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl792,989,868 - 93,043,832 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0779,339,498 - 79,393,676 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CROT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1792,989,868 - 93,043,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl792,989,868 - 93,043,832 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0779,339,498 - 79,393,676 (+)NCBIMhudiblu_PPA_v0panPan3
CROT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl787,345,664 - 87,399,794 (+)EnsemblGRCh38hg38GRCh38
GRCh38787,345,646 - 87,399,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37786,974,980 - 87,029,110 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36786,812,947 - 86,867,045 (+)NCBINCBI36hg18NCBI36
Build 34786,619,661 - 86,673,760NCBI
Celera781,679,821 - 81,733,990 (+)NCBI
Cytogenetic Map7q21.12NCBI
HuRef781,585,930 - 81,640,108 (+)NCBIHuRef
CHM1_1786,905,052 - 86,959,218 (+)NCBICHM1_1
CRA_TCAGchr7v2786,306,455 - 86,360,622 (+)NCBI
Crot
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3959,016,033 - 9,047,926 (-)NCBIGRCm39mm39
GRCm39 Ensembl59,016,033 - 9,047,324 (-)Ensembl
GRCm3858,966,033 - 8,997,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl58,966,033 - 8,997,324 (-)EnsemblGRCm38mm10GRCm38
MGSCv3758,966,048 - 8,997,146 (-)NCBIGRCm37mm9NCBIm37
MGSCv3658,972,054 - 9,003,152 (-)NCBImm8
Celera58,885,457 - 8,916,553 (-)NCBICelera
Cytogenetic Map5A1NCBI
Crot
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2425,068,270 - 25,133,111 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl425,080,587 - 25,133,109 (+)Ensembl
Rnor_6.0422,079,837 - 22,116,265 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl422,081,604 - 22,116,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0422,018,106 - 22,053,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4422,023,913 - 22,067,029 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1422,023,912 - 22,067,029 (-)NCBI
Celera420,575,938 - 20,626,257 (+)NCBICelera
Cytogenetic Map4q12NCBI
Crot
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955607378,439 - 413,394 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955607379,121 - 413,394 (-)NCBIChiLan1.0ChiLan1.0
CROT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11413,475,130 - 13,532,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1413,475,235 - 13,532,536 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1413,046,798 - 13,104,279 (+)NCBI
ROS_Cfam_1.01413,240,042 - 13,298,355 (+)NCBI
UMICH_Zoey_3.11413,443,706 - 13,500,941 (+)NCBI
UNSW_CanFamBas_1.01413,169,264 - 13,227,485 (+)NCBI
UU_Cfam_GSD_1.01413,452,909 - 13,510,196 (+)NCBI
Crot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511826,538,694 - 26,575,933 (+)NCBI
SpeTri2.0NW_0049367631,425,394 - 1,462,638 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CROT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl993,258,619 - 93,308,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1993,263,606 - 93,308,150 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29102,743,699 - 102,788,243 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CROT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12161,531,263 - 61,584,448 (-)NCBI
ChlSab1.1 Ensembl2161,531,060 - 61,584,447 (-)Ensembl
Vero_WHO_p1.0NW_02366604242,477,754 - 42,533,686 (+)NCBI
Crot
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473934,696,516 - 34,738,143 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000032790   ⟹   ENSPPAP00000010143
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl792,989,868 - 93,043,832 (+)Ensembl
RefSeq Acc Id: XM_003822727   ⟹   XP_003822775
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1792,989,868 - 93,043,832 (+)NCBI
Mhudiblu_PPA_v0779,339,498 - 79,393,676 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034964362   ⟹   XP_034820253
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0779,339,498 - 79,391,067 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003822775 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820253 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003822775   ⟸   XM_003822727
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034820253   ⟸   XM_034964362
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000010143   ⟸   ENSPPAT00000032790


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028298 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000010143 ENTREZGENE
NCBI Gene CROT ENTREZGENE